Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60493g00003 ATGGAAAATAGTTCATCAATTTCAACAACATTATTGTCCATCACCTTCTTCCTACTACTAATTCCTTCTTGTGTTATCTTTGTGAATTGCAACACCTTTGAAAGTGAATCAATATCAATAGATTTGCCACCGATCCCAGACATTTTAGGGTTCTTAGATGAGAGACTAGCTCTTATATTCCCAATAATTCAAGCTTTCAAGAACACAATAACATCTGATCCGTTGGGTGTAACCTCAACATGGACCGGTCCAAACATTTGCAACTACACAGGCTTCTACTGCGACAACCCACCCGACAACAAAACCGCCGTAACCGTCGCCTCCATAGACTTCAACGGCTTCCAACTCTCCGCCCCATCACTCGATGGCTTCATAGATCAGCTCCCGGACTTGGCAATATTTCACGCCAACTCTAATGGCTTCGCAGGCACCATTTCTCCAAAAATAGCGAAATTGAAGTTCTTGTATGAACTTGACTTGAGTAACAACCTCCTCTCCGGCGTGTTCCCCGTTTCGGTTCTCAACATGCCCACATTGTCCTTTCTCGACATAAGGTACAATTCGTTTTCCGGCAAGGTGCCGCCGAGCATATTCACCCAACCATTGGACGTTCTTTTTCTGAACAACAACAATTTCTTCCAGAACCTTCCTAACAACTTAGGAGACACAAAGGCTCTCTACCTCACTCTCGTAAACAACAAATTCACCGGCCCCATTCCTCCATCCATCGGAAAAGCCTCCGCCACGCTCACCGAAGTTCTTTTCCTCAACAACCTCCTCACCGGCTGCCTCCCCTACGAGATCGGCTTCTTGAAAAGGGCCACGCTCTTCGACGCCGGAAACAACCTCCTCACGGGGCCGCTCCCGTCCTCCTTTGGGTGCTTGGAGAGCGCGGAGCAGCTTAACCTAGCCGGGAACCTGTTGTACGGACAGATTCCGGAGGTGATTTGCGCGCTCGGTAATCATAACTTGTTGAATTTATCGCTGTCTAATAACTACTTCACGAAGGTGGGACCGGTGTGCAGGAGCATGATCAAGAAGGGTGTTGTTGATGTGAGGAAGAACTGTATTTCGGGGATTCCGAATCAGAGATCGGCGCAGGAGTGTTTCACGTTCTTCTTGACGCCGAGAAGTTGTCCGCGCGCGGCGTGGTTTAACTTCATACCGTGTAAGGTTCCGCCGCGGAAGAATAGTACAATAACGACGACGACGAGGAAGAGGAGTTTGCTTTCATATTCTGCTCTTTCCAGAAATAATAGAGTACTTTTGTAG 1272 0.4772 MENSSSISTTLLSITFFLLLIPSCVIFVNCNTFESESISIDLPPIPDILGFLDERLALIFPIIQAFKNTITSDPLGVTSTWTGPNICNYTGFYCDNPPDNKTAVTVASIDFNGFQLSAPSLDGFIDQLPDLAIFHANSNGFAGTISPKIAKLKFLYELDLSNNLLSGVFPVSVLNMPTLSFLDIRYNSFSGKVPPSIFTQPLDVLFLNNNNFFQNLPNNLGDTKALYLTLVNNKFTGPIPPSIGKASATLTEVLFLNNLLTGCLPYEIGFLKRATLFDAGNNLLTGPLPSSFGCLESAEQLNLAGNLLYGQIPEVICALGNHNLLNLSLSNNYFTKVGPVCRSMIKKGVVDVRKNCISGIPNQRSAQECFTFFLTPRSCPRAAWFNFIPCKVPPRKNSTITTTTRKRSLLSYSALSRNNRVLL 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60493g00003 423 Gene3D Ribonuclease Inhibitor 61 224 IPR032675 -
Stsc60493g00003 423 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 16 396 - -
Stsc60493g00003 423 Gene3D Ribonuclease Inhibitor 225 372 IPR032675 -
Stsc60493g00003 423 SUPERFAMILY L domain-like 66 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60493g00003 Stsc-Chr60493 30510 32867 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60493g00003 34 376 Leucine-rich Repeat extension Gene Families AT3G24480 44.023 1.50e-87 273
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60493g00003 - - gmx:100813314 560.066