Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60493g00002 ATGGGAGGAGGAACATCAATAACCAACTCCCTCTTCTTTTCATCACTACTACTACTCTCACTATCTTTACTCCAACTCCACTCCCAAAACGGCGTCGTTTACGCGCAAGAGAAGATAGCATCATCAGAGGAAGAAGCACTTGGCATATTTCAAGAAAGAGAGACACTTGAAATCATCATAGGAGGTGGAGGCTCACCTTCCCCTGCACCTGCACCTTCTCCACCTGAATATACCCCCTGCCCTCCGCCGCCGAAACCGCCAAGCCGTCTGGACAAAGCAAGAAAAGTGCTCCTAAACTTCACCAACTACATCGTGGACCCAAATGGCTACACCAATAACTGGTGCACCCAAACATTTAACACGTGTGATTTCAGAGGTATACGGTGTGCCACATACCCAAACTCTAACGAACTTGCCGTAGCTGGGTTGGACCTCAACCAAGCCGGAATCTATGGCCGCAACAACAAGCCTCTTTCCCTCTCTGGAATCTTGGACAGGATTCCGGAACTCACATTCTTCCATGTTAACTCCAACAACTTCTCCAGTTCCGTACCAGAGGAAATTGTCAAATACGGCTTCTTCTATGAGCTTGATCTTAGCAACAACAAGCTTTGTGGTCAGTTTCCAATGGAAACGCTTCAGAACAAGCAACTAGTGTTCTTGGACCTCCGGTTCAACCAGCTCACCGGCCCGATTCCTTCGCAACTATTCGAGATTCCTCTCGACGTTATTTTCATCAACAACAACCGGTTCAACCAGTACCTCCCCGAGAATTTCGGAAATACCCTGGCAAGGTACCTAACGTTTGCCAACAACCAATTGTGCGGTCCGATACCGAGGAGCATCGGCAAGGCGGCGAACACTCTGACGGAGGTGCTCTTCCTTGGGAACAACTTCGATGGCTGCTTGCCGTACGAAATCGGGAGCCTCAAGAAAGCTGTAGTATTTGATGTGAGCAAGAACCATTTAACAGGTCCGATACCGTACTCCTTCGGCTGCTTGAGGCAGATTCAGTTCTTGAATCTTGCAAACAACAAATTCTACGGACCGGTTCCAGAGAACATTTGCAAGCTTCCGGGGCTGATCAAGAACGGAAACTTGACCCTCTCAAACAACTACTTCACAGCGGTTGGTCCTGAATGCTGGAAACTGATAAAGTCAAAGGTTTTGGACTTGACCAATAACTGTGTTCCGGGTTTACCGAACCAGAGGTCGCAGAAAGAGTGTTGGGAGTTTCTTCATAGTGTGAAGCCTTGTCCCAATGAGAAGTATCTTTTGAGTTATTCACCTTGTGCGGGGCATTGGAATAAGGAGAGTGAGGACACGGAGGAGGTGTCGGCGGCGCCGCCTGTTACTTATAACGCTCTGAAACCGCACCGGTTGAGACTTTGA 1392 0.4856 MGGGTSITNSLFFSSLLLLSLSLLQLHSQNGVVYAQEKIASSEEEALGIFQERETLEIIIGGGGSPSPAPAPSPPEYTPCPPPPKPPSRLDKARKVLLNFTNYIVDPNGYTNNWCTQTFNTCDFRGIRCATYPNSNELAVAGLDLNQAGIYGRNNKPLSLSGILDRIPELTFFHVNSNNFSSSVPEEIVKYGFFYELDLSNNKLCGQFPMETLQNKQLVFLDLRFNQLTGPIPSQLFEIPLDVIFINNNRFNQYLPENFGNTLARYLTFANNQLCGPIPRSIGKAANTLTEVLFLGNNFDGCLPYEIGSLKKAVVFDVSKNHLTGPIPYSFGCLRQIQFLNLANNKFYGPVPENICKLPGLIKNGNLTLSNNYFTAVGPECWKLIKSKVLDLTNNCVPGLPNQRSQKECWEFLHSVKPCPNEKYLLSYSPCAGHWNKESEDTEEVSAAPPVTYNALKPHRLRL 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60493g00002 463 SUPERFAMILY L domain-like 92 397 - -
Stsc60493g00002 463 MobiDBLite consensus disorder prediction 67 87 - -
Stsc60493g00002 463 Gene3D Ribonuclease Inhibitor 90 263 IPR032675 -
Stsc60493g00002 463 Gene3D Ribonuclease Inhibitor 264 418 IPR032675 -
Stsc60493g00002 463 MobiDBLite consensus disorder prediction 61 88 - -
Stsc60493g00002 463 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 26 437 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60493g00002 Stsc-Chr60493 18912 20983 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60493g00002 89 413 Leucine-rich Repeat extension Gene Families AT3G24480 41.896 9.84e-74 238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60493g00002 - - psat:127108214 512.686