Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60493g00001 ATGAGGAAGCCATGTTGTGATACCAATAACAAAGAATTGAACAAAGGAGCTTGGTCCAAACAAGAAGATCAAAAACTCATTGATTATATCAACAAACATGGCGAGGTTTGTTGGCGTACCCTCCCTCAAGCTGCAGGTCTATTAAGGTGCGGCAAAAGCTGTAGACTAAGATGGATAAACTATTTGCGCCCAGACCTTAAAAGAGGCAACTTTGCCGAAGATGAAGAAGATCTCATCATCAAGCTTCATGCTCTACTAGGCAACCGGTGGTCGCTAATAGCGGGAAGATTGCCCGGAAGAACGGATAATGAAGTGAAGAATTATTGGAATTCTCACATAAAAAGGAAGCTTATTAGCAAAGGCATTGATCCAAATAATCATCGTTTAAAATCATCATCATCTGGGTTATTGAAAACAACTAATAATAATAATAATAATGGCTATCAAGTAGTCTCATCAGATGAGGATGAATCAAATAATAATAATGCGTTATTATTGCCGGATTTAAACCTTGACCTAACAATCAGCATTCCTTCATCATCATCATCAGCTGAAAACAATAATCTCAAATCAACAATTCTTCATCATCATCATCATCATCATCATCATGAATCAAATTCTTCAAGGCGGGAACGGAACTTATTGGCTGCTAATAAATCCCCTCCAACGCTTCTTCTATTTCAGTAA 687 0.3755 MRKPCCDTNNKELNKGAWSKQEDQKLIDYINKHGEVCWRTLPQAAGLLRCGKSCRLRWINYLRPDLKRGNFAEDEEDLIIKLHALLGNRWSLIAGRLPGRTDNEVKNYWNSHIKRKLISKGIDPNNHRLKSSSSGLLKTTNNNNNNGYQVVSSDEDESNNNNALLLPDLNLDLTISIPSSSSSAENNNLKSTILHHHHHHHHHESNSSRRERNLLAANKSPPTLLLFQ 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60493g00001 228 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Stsc60493g00001 228 Pfam Myb-like DNA-binding domain 68 112 IPR001005 -
Stsc60493g00001 228 MobiDBLite consensus disorder prediction 125 163 - -
Stsc60493g00001 228 MobiDBLite consensus disorder prediction 122 163 - -
Stsc60493g00001 228 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 191 - -
Stsc60493g00001 228 Gene3D - 69 158 - -
Stsc60493g00001 228 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Stsc60493g00001 228 FunFam MYB transcription factor 69 130 - -
Stsc60493g00001 228 SMART sant 14 64 IPR001005 -
Stsc60493g00001 228 SMART sant 67 115 IPR001005 -
Stsc60493g00001 228 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Stsc60493g00001 228 FunFam MYB-related transcription factor 14 67 - -
Stsc60493g00001 228 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Stsc60493g00001 228 Gene3D - 6 67 - -
Stsc60493g00001 228 CDD SANT 70 113 IPR001005 -
Stsc60493g00001 228 CDD SANT 17 62 IPR001005 -
Stsc60493g00001 228 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 62 IPR017930 -
Stsc60493g00001 228 SUPERFAMILY Homeodomain-like 13 109 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60493g00001 Stsc-Chr60493 2749 4648 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60493g00001 2 178 MYB Transcription Factor Family AT2G16720 57.286 1.38e-73 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc60493g00001 Myb_DNA-binding 2.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60493g00001 K09422 - gmx:100814923 279.256