Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60492g00014 ATGCTTCTCAAGTGTATAAGCTTTCCTGTTTCAAAGAAGACAAGATCATCCAAGAACAACTCTCCATCGGTTATAGAATTGTTGTGCCATCAATTTTCCCTAGAAGATCTGAAAAGATCAACCAACAACTTCAACCAGAAACTAATAGTTGGAAAAGGAGGTTTTAGCACTGTATACAAAGGATGTCTCAAACACAATGGTAGATCAGATCATACAATAGCATTAAAGCTCAAGTGTTGCAACTCCAACCAGCATTTCCTTGAGTTCATGAAGGAAATTGAGTTGCTATGCCAGCTTCATCATCCTAATTTGATCTCTCTTGTAGGATTTTGCAACCATGAAAAGAAAAAGATTATTGTTTATGACTTCATGTGCAATGGCTCTCTTCATGATCACCTTTACAATAAAGACAGGAAACCACTATCATGGCAGAAAAGGCTAGAGATATGTATAGGAGTTGCGCGTGGACTACACTATCTTCACGCCGGAGCCAAGCGCTCTATCTTTCATTGTGACATCAAACCTAGTAACATTCTTTTGGATAGCAATATGGTGCCTAAGCTCTCAGACTTTGGCCTTTCATTGCAGGGACCACTATCTACTTCCAAGCCAAAACCAATTGAAGTAGACTATGTTGCAGGTACATTTGGATACTTAGCCCCTGAGTGTTTCCAACGCCTGATCGTTACAGATAAATGTGATGTTTATTCCTTTGGTATGGTTCTACTTGTAATGGTATGCATGAAGGACAAGGATTTGTTTCTTAACAAGGCCAACATGTTGGGTAACCAACATTTGGAGAAGTTCATTGATGATCAAGTACAACCATGGAATGTAATAGCCTTTTTACAGCGGTTCCCAATCGAAGAAATCATAGACCCAACCCTCAGGGGAAAGATTGCACCAGAGTGCTGGGAAGTATTCATGGATGTTACAGAGAGATGTTTGAAGCTTGAACCTGATGATAGACCAACAATGGGCGAAGTAGAGGTGTTGCTTGAGCATGCTTTGTTATTGCAGGCACAAGCAGATATCAAAAAGAACAATGTTTGCTATTCCTTATCATCCACCACCATTATAAACTTAGGTGAAGTCATTTGTATGCATGATATTAATTTAGAAGAGGTGATATTCCATCGATTTTCTCTAGCTGATCTTAGGCGAACAACTTTCGACTTTGAACGTAGAGTCATCGGAAGAGGAAGCTTTAGTACAGTATACAGAGGTTGTATCTCACTAAATGGAGCTTCTTATCATTCAATTGCAATAAAGAAGTTGGATTGGTTATCTATTTGTGATAGTGATATAGAGTGGAATTTGGAACACATTGGGAATATTTCCCAACTTCGCCATCCGAATTTGGTGTCTCTTTTAGGATTCTGTGATGAACTTGATGAGAAGATTCTTGTATACATGTATATTCCCAATGGATCTCTCCATTATCACTTAAATTGGAATGAAGAAGCTCTAACATGGAAGAAAAGACTAGAAATATGCATTGGAGTAGCAGAAGGATTGAACTACCTTCACACAGCATCTATTTTTCACCATAACATAAAACTCAGCAACATCCTTTTGGATTATGATATGGTGCCCAAACTCTCAGATTTTGGGCTCTCCAGGTCCAAGCCAATGGATTCAGAAGATTATGCTTCTCCAGAGTTGTTACAAGGACATGATTTCATAGATAAATGTGATGTATATTCCTTTGGTATAGTTCTCTTAAAGGTTGTATTAACAAACAAGCTACCAATTGGTGAAGGGATTCTTTATCTGAGTCTCAAGGGAAAGATTGCACCAGAGTGTTGGGAAGCATTCATGAATATAACAAAATGTTGTTTGATGTTTGAAGCAAATGAGAGACCAACAATGAATGATGTGAAAACTCAACTTCAACATGCTCTGGCACTGCAAGAGGAGGCAGATGGCAACACAAGTGGTGGTGATTACAACTTGTTATCTGTGACCTTTGATCCTCCGGTTGGAAGAAGCATATAG 1998 0.3874 MLLKCISFPVSKKTRSSKNNSPSVIELLCHQFSLEDLKRSTNNFNQKLIVGKGGFSTVYKGCLKHNGRSDHTIALKLKCCNSNQHFLEFMKEIELLCQLHHPNLISLVGFCNHEKKKIIVYDFMCNGSLHDHLYNKDRKPLSWQKRLEICIGVARGLHYLHAGAKRSIFHCDIKPSNILLDSNMVPKLSDFGLSLQGPLSTSKPKPIEVDYVAGTFGYLAPECFQRLIVTDKCDVYSFGMVLLVMVCMKDKDLFLNKANMLGNQHLEKFIDDQVQPWNVIAFLQRFPIEEIIDPTLRGKIAPECWEVFMDVTERCLKLEPDDRPTMGEVEVLLEHALLLQAQADIKKNNVCYSLSSTTIINLGEVICMHDINLEEVIFHRFSLADLRRTTFDFERRVIGRGSFSTVYRGCISLNGASYHSIAIKKLDWLSICDSDIEWNLEHIGNISQLRHPNLVSLLGFCDELDEKILVYMYIPNGSLHYHLNWNEEALTWKKRLEICIGVAEGLNYLHTASIFHHNIKLSNILLDYDMVPKLSDFGLSRSKPMDSEDYASPELLQGHDFIDKCDVYSFGIVLLKVVLTNKLPIGEGILYLSLKGKIAPECWEAFMNITKCCLMFEANERPTMNDVKTQLQHALALQEEADGNTSGGDYNLLSVTFDPPVGRSI 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60492g00014 665 SMART serkin_6 44 338 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60492g00014 665 SMART serkin_6 392 636 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60492g00014 665 FunFam Receptor-like protein kinase ANXUR2 124 355 - -
Stsc60492g00014 665 PANTHER OS07G0166700 PROTEIN 29 340 IPR045272 GO:0004714|GO:0006468
Stsc60492g00014 665 SUPERFAMILY Protein kinase-like (PK-like) 29 331 IPR011009 -
Stsc60492g00014 665 SUPERFAMILY Protein kinase-like (PK-like) 376 634 IPR011009 -
Stsc60492g00014 665 Gene3D Phosphorylase Kinase; domain 1 5 123 - -
Stsc60492g00014 665 Gene3D Phosphorylase Kinase; domain 1 362 473 - -
Stsc60492g00014 665 ProSitePatterns Protein kinases ATP-binding region signature. 50 76 IPR017441 GO:0005524
Stsc60492g00014 665 ProSitePatterns Serine/Threonine protein kinases active-site signature. 168 180 IPR008271 GO:0004672|GO:0006468
Stsc60492g00014 665 ProSitePatterns Protein kinases ATP-binding region signature. 398 425 IPR017441 GO:0005524
Stsc60492g00014 665 Gene3D Transferase(Phosphotransferase) domain 1 124 356 - -
Stsc60492g00014 665 Gene3D Transferase(Phosphotransferase) domain 1 474 649 - -
Stsc60492g00014 665 FunFam Receptor-like protein kinase ANXUR2 10 123 - -
Stsc60492g00014 665 ProSiteProfiles Protein kinase domain profile. 392 636 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60492g00014 665 Pfam Protein tyrosine and serine/threonine kinase 49 330 IPR001245 GO:0004672|GO:0006468
Stsc60492g00014 665 Pfam Protein tyrosine and serine/threonine kinase 396 631 IPR001245 GO:0004672|GO:0006468
Stsc60492g00014 665 ProSiteProfiles Protein kinase domain profile. 44 338 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60492g00014 Stsc-Chr60492 82697 84965 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60492g00014 379 641 Receptor kinase-like Gene Family AT5G39000 38.235 3.95e-46 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Stsc60492g00014 PK_Tyr_Ser-Thr 3.5e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60492g00014 - - adu:107486597 1217.6