Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Stsc60492g00012 | ATGGATGATGATAATGATGCATTGATGAAAGCTGGTTCATTAGCATTTACTCAAGTGTTTAGTGCAATCTTGAACGCTGCTGTTGATATGAACTTGTTTGATATCATATCATCATCATCATCATCATCATCATCATCATTAGGAATGAGTGCCTCTCAAATTGCCTCAATGCTTCCAAACCAACACACTGAGATGGCTAGCAGGCTTGAACGCATGCTTCCATCTTTGGTGGCTCATTCTCTTCTCACTTGCTCCATTCATAACCAACAGAAGCTTTATTCTCTCTCCCCTGTTGGACAATACTTTCGACTTCATCGTCAACAAGGCACCTCTTTGGCTTCAATGTCAACTTTAATCTATCAGGGCTTCCGTCATATTTGGAAAGATACAAAAGATGCAATAATGGATGGTAACAATGAAAACCATTTCGAAAAAGTGTATGGAAAGAAGGCATACGAATATATGGAGACAGAGGACAGAGAGTTAGGTAAGCTTTTCGAGCAAGCAATGTCTGAAGCTGGGCCATTAGGAATGAAACCAATCCTTAATGCATACAAAGGCTTTGAGGGCATATCAACTTTAGTTGAAGTAGGAGGTGGAATTGGACAAGTCTTGAACCAGATTCTCTTCCAATATCCTTCAATTAAAGGAATTAATTTTGATTTGCCTCATGTTGTGAAAAACGCACCCCCTCGTCCAGGGATCGAGCATATCGGAGGAGACATGTTTAAACGCGTTCCCAAAGGTGATGCCATTTTGCTCAAGCATGTATGCCATAATTGGAAAGATGAAGAATGTGTGAAGTTTCTAAGAAACTGTTATGAAGCTTTGCCAGCAGATGGGAAGGTCATTGTTTTGGATGCTTTATTGCCAGAAATTCCGAAATCAACATCTGATAAGGATACTTTTGCTGTGGATGTCGATTTTCTTATGTTTCTAATTCATGGTGGAAAGGAAAGAACTGAAAAAGAATTTGAGAAATTGTGCAAGAGCTCAGGATTTTCCCGATTTAAGGTTGCTTTCAATGGTTCGGTTGATGCAGTGATGGAGTTCCACAAATAA | 1062 | 0.3955 | MDDDNDALMKAGSLAFTQVFSAILNAAVDMNLFDIISSSSSSSSSSLGMSASQIASMLPNQHTEMASRLERMLPSLVAHSLLTCSIHNQQKLYSLSPVGQYFRLHRQQGTSLASMSTLIYQGFRHIWKDTKDAIMDGNNENHFEKVYGKKAYEYMETEDRELGKLFEQAMSEAGPLGMKPILNAYKGFEGISTLVEVGGGIGQVLNQILFQYPSIKGINFDLPHVVKNAPPRPGIEHIGGDMFKRVPKGDAILLKHVCHNWKDEECVKFLRNCYEALPADGKVIVLDALLPEIPKSTSDKDTFAVDVDFLMFLIHGGKERTEKEFEKLCKSSGFSRFKVAFNGSVDAVMEFHK | 353 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Stsc60492g00012 | 353 | SUPERFAMILY | S-adenosyl-L-methionine-dependent methyltransferases | 119 | 341 | IPR029063 | - | |
| Stsc60492g00012 | 353 | ProSiteProfiles | SAM-dependent O-methyltransferase class II-type profile. | 12 | 353 | IPR016461 | GO:0008168 | |
| Stsc60492g00012 | 353 | SUPERFAMILY | "Winged helix" DNA-binding domain | 3 | 102 | IPR036390 | - | |
| Stsc60492g00012 | 353 | Gene3D | Vaccinia Virus protein VP39 | 163 | 340 | IPR029063 | - | |
| Stsc60492g00012 | 353 | PIRSF | O-mtase | 1 | 353 | IPR016461 | GO:0008168 | |
| Stsc60492g00012 | 353 | Pfam | Dimerisation domain | 23 | 76 | IPR012967 | GO:0046983 | |
| Stsc60492g00012 | 353 | FunFam | Caffeic acid 3-O-methyltransferase | 1 | 102 | - | - | |
| Stsc60492g00012 | 353 | CDD | AdoMet_MTases | 193 | 285 | - | - | |
| Stsc60492g00012 | 353 | PANTHER | O-METHYLTRANSFERASE | 17 | 337 | IPR016461 | GO:0008168 | |
| Stsc60492g00012 | 353 | Pfam | O-methyltransferase domain | 127 | 335 | IPR001077 | GO:0008171 | |
| Stsc60492g00012 | 353 | Gene3D | - | 19 | 181 | IPR036388 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Stsc60492g00012 | Stsc-Chr60492 | 69831 | 71367 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Stsc60492g00012 | 4 | 343 | Monolignol Biosynthesis Gene Families | AT5G54160 | 45.714 | 4.78e-97 | 290 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Stsc60492g00012 | K13066 | - | adu:107471788 | 504.597 |