Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60492g00006 ATGAACATGATTATATCATTCTTGTTATTCTTGTTAGTCCTTCACCAACAACACTACTTCATCAAACCCGTATACTCCTCCTCCTACTCTGGTGTACAAGATTTAGCAATCAACTGTGGCAGTGACACTTCCTCTGATTCAGGCGGAATTTGGATTGGAGACACTACCAGTACCACCAATTCCAAACACTTTTCTCTCTTAGAATCATCACCACAAAAGAATCAATCTTCAATCCCCGTTGTTACTCCTCATCATGATTATCCAGGTTCAATCTCAATCCCTTATGGCACAGCAAGAATCTCTCGCTATCAATTCACCTATTCTTTTCATGCTGTCACTCCTGGAGTTAAGTTCATTAGGCTTCACTTCAACCCTGCTTCATACCCCAACTTCCACCCTTCTAAGTCCTTGTTTTCTGTGAAATCAGGACCTTATACCCTTCTCAAGGACTTCAACGCTTCACGTGCTACTCAAGAACAACAAAACAAGACTCTCTTTGTTGAGTATGGGCACTGCATAAATGTTGAACCAGGTCAGAATCTAACCTTGACCTTCATCCCAAACACCAGTCATAAAAATTCTTATGCCTTTGTTAATGGGATTCAAGTCATGTCTTTGTTCAAGTACCATCATCAATGCAACAAGCAAAAGAATTCAGGGTTCAAATTTTATGAGGTAGTTCATAATGAAGAGACAAGTTTGAATTGTTCATCAGCACAATCACCACGACCACGAAAACCAGTATCTGGTGTTGTTTTCTACTGTGTCATTGCAGCTTCTGTTTTCATTTCAGTATCTTCTGTTTTCCTCTTATGTATTTGGGTTCGGAGAAACTCTAGAATGAAGCACAAGGCCAAGATGGAGTTGCTCTATCAAGAGACAAGTTCAAGAAAATCAATAACACTGGCCTCAGGGAACTCATGTCGTTGCTTCTCAATCATTGAGATAAGAGCAGCCACCATCAACTTCGATGGGATCTTCGTTGTTGGTGTTGGAGGCTTTGGCAAAGTTTACAAAGGCTACATCGATGATGGCACGAAACCCATCGCCATCAAGCGCTTCATCCCTGAAAATGGTGTGCAAGGTGTTCAAGAGTTCAAGAACGAGGTTGAGATGTTGTCGCAACTTAGCCACCCTCATTTGGTGTCTTTAATTGGCTATTGCAACGACGAAGACGACATGATAATAGTCTACGATTTCATGGCGAATGGGACCCTCAGGGATCATCTGTATGGGAGTTGTAATACACCTCTTTCGTGGAAGCAACGGCTAAAGATATGCATAGGGGCAGGGCTAGGATTGGAATATCTTCATAGTGGTGAGAAGTTCAAGATCATTCACCGTGATGTGAAGACATCAAATATCTTGTTGGATGAGGAATGGGTGGCTAAGGTTTCTGATTTTGGTTTGTCCAAAATTGGACCTAATGGGATCTCAAAGTTCCATGTTAGCACAGAGGTTAAGGGTAGTCTTGGATATTTAGACCCTGAATACTCAAAGACTAAGAGGTTGACTCATAAATCTGATGTCTACTCTTTTGGTGTGGTGTTGCTTGAGGTGTTGTGTGGTAGGGCTCCTTTGCTTAGAAAAGTTGAGGGACCAAAGAGGTGCCTTGTGGAATGGGCAAGGTCATGCCAAAGTGAGGGACCCCATGCCATTGACCAGATGGTTGACCCGTTTATTAGGGGCAAGATTGCCCAAGAATGTTTGAGCAAGTTTGTTGAGATGGCACTGAATTGTGTTGTTCATGAAGGAAATCAGAGGCCATCAATGGAAGAAGTGGTGGAGGGACTTGAACTTGCATTGCAGCTACAACTAAAAGCAGAAGAAGAGTGA 1836 0.4237 MNMIISFLLFLLVLHQQHYFIKPVYSSSYSGVQDLAINCGSDTSSDSGGIWIGDTTSTTNSKHFSLLESSPQKNQSSIPVVTPHHDYPGSISIPYGTARISRYQFTYSFHAVTPGVKFIRLHFNPASYPNFHPSKSLFSVKSGPYTLLKDFNASRATQEQQNKTLFVEYGHCINVEPGQNLTLTFIPNTSHKNSYAFVNGIQVMSLFKYHHQCNKQKNSGFKFYEVVHNEETSLNCSSAQSPRPRKPVSGVVFYCVIAASVFISVSSVFLLCIWVRRNSRMKHKAKMELLYQETSSRKSITLASGNSCRCFSIIEIRAATINFDGIFVVGVGGFGKVYKGYIDDGTKPIAIKRFIPENGVQGVQEFKNEVEMLSQLSHPHLVSLIGYCNDEDDMIIVYDFMANGTLRDHLYGSCNTPLSWKQRLKICIGAGLGLEYLHSGEKFKIIHRDVKTSNILLDEEWVAKVSDFGLSKIGPNGISKFHVSTEVKGSLGYLDPEYSKTKRLTHKSDVYSFGVVLLEVLCGRAPLLRKVEGPKRCLVEWARSCQSEGPHAIDQMVDPFIRGKIAQECLSKFVEMALNCVVHEGNQRPSMEEVVEGLELALQLQLKAEEE 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60492g00006 611 FunFam FERONIA receptor-like kinase 34 206 - -
Stsc60492g00006 611 CDD STKc_IRAK 338 599 - -
Stsc60492g00006 611 Gene3D - 35 206 - -
Stsc60492g00006 611 ProSiteProfiles Protein kinase domain profile. 323 602 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60492g00006 611 Pfam Protein tyrosine and serine/threonine kinase 329 597 IPR001245 GO:0004672|GO:0006468
Stsc60492g00006 611 PANTHER OS07G0166700 PROTEIN 307 605 IPR045272 GO:0004714|GO:0006468
Stsc60492g00006 611 Pfam Malectin domain 34 169 IPR021720 -
Stsc60492g00006 611 SUPERFAMILY Protein kinase-like (PK-like) 301 602 IPR011009 -
Stsc60492g00006 611 SMART serkin_6 323 601 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60492g00006 611 ProSitePatterns Protein kinases ATP-binding region signature. 329 352 IPR017441 GO:0005524
Stsc60492g00006 611 ProSitePatterns Serine/Threonine protein kinases active-site signature. 445 457 IPR008271 GO:0004672|GO:0006468
Stsc60492g00006 611 Gene3D Phosphorylase Kinase; domain 1 282 400 - -
Stsc60492g00006 611 FunFam receptor-like protein kinase FERONIA 284 400 - -
Stsc60492g00006 611 Gene3D Transferase(Phosphotransferase) domain 1 401 610 - -
Stsc60492g00006 611 FunFam Receptor-like protein kinase FERONIA 401 611 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60492g00006 Stsc-Chr60492 47656 49491 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60492g00006 306 610 Receptor kinase-like Gene Family AT3G51550 60.656 2.46e-118 371
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Stsc60492g00006 PK_Tyr_Ser-Thr 4.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60492g00006 - - adu:107486605 968.378