LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc60492g00002	ATGTACGGTATGGAAGCACCGGCGGTGATTAGCCTCTCAATCCTAATATTTTTGCTGCTTCACTTGTCGTTCCCCATGCAGGTGGTGAATTCATACGATCCTGTCGATAAATTGGCCGTCAAGTGCGGCTACTCCGGTAACATAATCCACAATCCCGATCGTCGGAACTGGGTTGGAGACATTGACTCCAAACTATTTTCTACAATTGAGACACAACATGCGCAAGCGTCGTTCACAACCACCACTCCTACATCCCCGCCGTCAGTTGATGTGGTTCCGTATGGCACCGTACGCATTTTCCGCTCCCAATTCACATACTCTTTTCCTCTCACTGATGGTGGCCCCAAGTTCGTTCGGCTTCACTTTTATCCAACAACTTATGACAACTTTGACATCTACGACTCCCTCTTCTCTGTTACAGCAGGCAACTTCACCCTTCTCAAAGACTTCAACGCTTCACTTTGGCTTCGCTATGGCGAAGACACCGTCTCCAAAGAATACTTGATAAACGTTGGAGCAGGTCAGAGGTTAAACCTAACCTTTGTTCCAAGCACCAAGAAGCACCAAGATGCGTATGCTTTCATCAACGGGATCGAGGTGGTGTCCATGCCTTCCTTCCTCTATTACAGCGACCTTAATAGTACTGATGATGATCAATCCAATGATGGGATTCACTCTGTTGGCTATGACAATTCACCACCATACCAACTTGAACTTAGCAGAGCTCTTGAGACACTTTACAGAGTTAACGTTGCCGGAGGAACAATTCCTCCAGAACTAGATACAGGTATGTTCAGGAATTGGGAATCTGATGAGGATCGTTACTTGTTGGAACATCATCCGCTTAGCGAATCTAATGGCTTTGGCCTTCACTTAAACCTCAAGAATAACACCATTCCAGATTACACTGCACCGGAATCGTTATACTTAACTGCCCGAAGCTACGGGATGAACGCAACTCAAAACTATAACGTTACTTGGCTCTTTGATGTAGACTCGAACTTCAGGTACATGGTGAGGTTGCATTTTTGTGAGTTTGAGCCAGAGATCAGATACTACGGCGACAGAACCTTTCAGATCTTCATAGCTGAGGCTATGGCTGAGGACAAGGCTGATGTGATTGGGTGGAGTGGTGGCAACCTCATTCCAGTTCATAGAGACTACACTGTGTTTATGTCCGACCAGCGAAAATTTTCCAATAAAGTTACTCTTTCAATCAAGCTTCAACGACTACCAAATCAAAGGGAAACCAATTTCCATAGTGTCATACTGAATGGCATCGAGATCTTCAAAATCAGTGATGATAGTCAAAACCTTGCAGGACCCAATCCTGATCCAGTTCCCTCGCAACCGAAACTTCTTGTTTACCCATCTTCTAAATCCTCAAAGAAAACAATCATTGTTGCGTTCATTGCAGTTGTAGTTTCAATCCTCGTGCTAGCCTCTATCATTGGACTAATCCTTTTCAGCCGAAGGAGAAGGAGTTCTTCCTTTAAGAAGGGAAACACAAAAAAAGAAGGGTCCTCCTCATTGCCATCACACCTCTGCCGCTACTTTACAATCGCGGAGATCAGAGCTGCCACAAACAACTTCGACGACGTGTTCATCATCGGAGTTGGAGGATTCGGCAACGTTTACAAGGGCTACATCGACGACGGTGTAACCCCCGTCGCCATCAAGCGACTCAGACCTGGTTCTCAACAAGGCATCAACGAGTTCCTCAACGAGATTGAGATGCTTTCCCAGCTCCGGCACCTTCATTTGGTGTCCCTCATTGGCTACTGCAACGACGGCGTAGAGATGATCCTCGTCTACGACTTCATGCAACGTGGCACTCTCCGCGAGTATCTCTACGGTTCTGATAATCCACCTCTTACGTGGAAGCAGAGGCTCCAGATCCTATTGGGCGCAGCAAGAGGTCTACATTATCTTCATGCGGGTGCGAAGCACAATATCATCCACCGTGACGTCAAGAGCACAAATATCTTACTGGACGACAAATGGGTGGCCAAGGTTTCCGACTTTGGCTTATCTAAAGTAGGACCCACGGGGTCTTCTCAAACCCACGTCAGCACCGTGGTTAAGGGCAGCCTTGGATATTTAGACCCTGAGTACTACAAGCGTCAACGCTTGACTTTAAAATCTGACGTGTACTCCTTCGGTGTGGTCCTTCTTGAGGTATTGTGTGCGAGGCCGCCTTTGCTGCGTAACGTGGACAAGCGCAAGGCCAGCTTGGTTGACTGGGTAAGAAAAATAAGTGATGAGGGAAAGCTCGATCAGACGGTGGAGATTTTCTTGAAAGGGTCAATCACGCGGGAGTGTTTGAAGTGGTACGGTCAATTGGCGTTGAGTTGTTTGCGTGATGATGGGAATGAACGGCCATCGATGAGTGACGTGGTGGGGGCACTCGAGTTTGCAATGCAGTTGGCGGAAAGCGAGGGTGATAACAATTTTGGTGGGGCCCAGGATAAGGAAAAGGGTGAGGATAGACCGTTATTGATACCGCAGTTTACAAGTGATGAAGGGAGTGGGGTGGTTTTCACTAGTGATGAATCTGGGACCAGGGATAGTAGGGTAACCACCGCGTCTGGTAGTAGTGAGGAACGTGCTATGCTTTCTGCCGTGGTCTTCTCTGAGATTGGTGATCCAACAGCAAGATAA	2661	0.4735	MYGMEAPAVISLSILIFLLLHLSFPMQVVNSYDPVDKLAVKCGYSGNIIHNPDRRNWVGDIDSKLFSTIETQHAQASFTTTTPTSPPSVDVVPYGTVRIFRSQFTYSFPLTDGGPKFVRLHFYPTTYDNFDIYDSLFSVTAGNFTLLKDFNASLWLRYGEDTVSKEYLINVGAGQRLNLTFVPSTKKHQDAYAFINGIEVVSMPSFLYYSDLNSTDDDQSNDGIHSVGYDNSPPYQLELSRALETLYRVNVAGGTIPPELDTGMFRNWESDEDRYLLEHHPLSESNGFGLHLNLKNNTIPDYTAPESLYLTARSYGMNATQNYNVTWLFDVDSNFRYMVRLHFCEFEPEIRYYGDRTFQIFIAEAMAEDKADVIGWSGGNLIPVHRDYTVFMSDQRKFSNKVTLSIKLQRLPNQRETNFHSVILNGIEIFKISDDSQNLAGPNPDPVPSQPKLLVYPSSKSSKKTIIVAFIAVVVSILVLASIIGLILFSRRRRSSSFKKGNTKKEGSSSLPSHLCRYFTIAEIRAATNNFDDVFIIGVGGFGNVYKGYIDDGVTPVAIKRLRPGSQQGINEFLNEIEMLSQLRHLHLVSLIGYCNDGVEMILVYDFMQRGTLREYLYGSDNPPLTWKQRLQILLGAARGLHYLHAGAKHNIIHRDVKSTNILLDDKWVAKVSDFGLSKVGPTGSSQTHVSTVVKGSLGYLDPEYYKRQRLTLKSDVYSFGVVLLEVLCARPPLLRNVDKRKASLVDWVRKISDEGKLDQTVEIFLKGSITRECLKWYGQLALSCLRDDGNERPSMSDVVGALEFAMQLAESEGDNNFGGAQDKEKGEDRPLLIPQFTSDEGSGVVFTSDESGTRDSRVTTASGSSEERAMLSAVVFSEIGDPTAR	886

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc60492g00002	886	FunFam	Receptor-like protein kinase FERONIA	608	825	-	-
	Stsc60492g00002	886	Gene3D	-	37	204	-	-
	Stsc60492g00002	886	Gene3D	-	241	434	-	-
	Stsc60492g00002	886	MobiDBLite	consensus disorder prediction	834	866	-	-
	Stsc60492g00002	886	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	652	664	IPR008271	GO:0004672\|GO:0006468
	Stsc60492g00002	886	FunFam	FERONIA receptor-like kinase	241	433	-	-
	Stsc60492g00002	886	Gene3D	Phosphorylase Kinase; domain 1	492	607	-	-
	Stsc60492g00002	886	ProSiteProfiles	Protein kinase domain profile.	531	806	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc60492g00002	886	CDD	STKc_IRAK	537	804	-	-
	Stsc60492g00002	886	Pfam	Malectin-like domain	41	432	IPR024788	-
	Stsc60492g00002	886	SUPERFAMILY	Protein kinase-like (PK-like)	505	806	IPR011009	-
	Stsc60492g00002	886	MobiDBLite	consensus disorder prediction	841	866	-	-
	Stsc60492g00002	886	FunFam	Receptor-like protein kinase FERONIA	503	607	-	-
	Stsc60492g00002	886	PANTHER	OS03G0124300 PROTEIN-RELATED	12	499	IPR046957	GO:0004672
	Stsc60492g00002	886	FunFam	FERONIA receptor-like kinase	37	204	-	-
	Stsc60492g00002	886	SMART	serkin_6	531	806	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc60492g00002	886	Pfam	Protein tyrosine and serine/threonine kinase	537	802	IPR001245	GO:0004672\|GO:0006468
	Stsc60492g00002	886	ProSitePatterns	Protein kinases ATP-binding region signature.	537	560	IPR017441	GO:0005524
	Stsc60492g00002	886	Gene3D	Transferase(Phosphotransferase) domain 1	608	825	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc60492g00002	Stsc-Chr60492	14575	17480	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc60492g00002	32	886	Receptor kinase-like Gene Family	AT3G51550	44.966	0.0	698

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_CrRLK1L-1	Stsc60492g00002		Malectin_like	7.7e-37	CL0202

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc60492g00002	-		-	mtr:25497555	867.84