Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60491g00002 ATGGATTCTTCTGCTTCCACATTCTTCAACGACCTTCCTCCTCTCAAGAGACTCAGATTACAACTCCAACAACAACAACAACACACTACTTCCTCTCCTTTACCCGCCAAGAAGCGCAAAGATTCTCGAAACGCTGCGTTTTACGAAAACCTAATCCCAATCCCAATCCCTCCTCCCGTCACTGCCTATTCTTTACCCGCCAAGAAACGAGTATGCGCGCTTCAACCCTTCCTCACTCAAAACGACGCCGTTTCGCCCTTCCAAATCGACCTCAACGTCGAGTTCCAAGAAAACGACGAAAACCTACAATCTCCCTCCAAATCTCCCCAACACTCTCAAGAGCAATCTCTTGACGGTAACGGTAACGTCAACGATTGCGACGCTGTTGACGATGACGACGGGATTTTATGCTGTGTGTGCCAGAGCACAGACGGAGACCCTGCGGATCCGATCGTCTTCTGCGACGGTTGCGATCTAATGGTTCACGCTTCCTGCTACGGAAACCCGCTCTCAAAATCAATCCCCGACGGCGACTGGTTCTGCGAACGGTGTCGTTTCAAACACCACGACGACGACGAAGCTGCTGCTTCTTCAGATCTGAGCTCCGGTTCTTGCTGCCTCTGTCCGGTGACCGAAGGCGCGATGAAGAAGACGGCGGATAACCGTTGGGCGCACATTGTGTGCGCGCTGCTGGTGCCGGAGGTGTTCTTCTTGGACCCTGAAGGGAGAGAGGGAATCGATTGCTCTATGGTTCCGAAGAAGAGGTGGTTGGAGAGGTGCTATGTGTGTGATTCTTGTGAGGGTTGTGCTGTTGTGTGCTCTGAGCCCAAGTGTGGTTTGGCGTTTCATGTTACGTGTGGGATCAGAGAGGAGCTTTGTATTGAGTATAAGGAAGGGAAGAAAGGCGCTACCATTGTTGCTGGCTTCTGCAAAACTCATACTCAAATTTGGGACAAGCAATCAGGGAAATACAAAATTGTTGCGGTTGAAGATAAAATGTAG 1002 0.506 MDSSASTFFNDLPPLKRLRLQLQQQQQHTTSSPLPAKKRKDSRNAAFYENLIPIPIPPPVTAYSLPAKKRVCALQPFLTQNDAVSPFQIDLNVEFQENDENLQSPSKSPQHSQEQSLDGNGNVNDCDAVDDDDGILCCVCQSTDGDPADPIVFCDGCDLMVHASCYGNPLSKSIPDGDWFCERCRFKHHDDDEAAASSDLSSGSCCLCPVTEGAMKKTADNRWAHIVCALLVPEVFFLDPEGREGIDCSMVPKKRWLERCYVCDSCEGCAVVCSEPKCGLAFHVTCGIREELCIEYKEGKKGATIVAGFCKTHTQIWDKQSGKYKIVAVEDKM 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60491g00002 333 CDD PHD_BRPF_JADE_like 136 184 - -
Stsc60491g00002 333 SMART PHD_3 259 314 IPR001965 -
Stsc60491g00002 333 SMART PHD_3 136 185 IPR001965 -
Stsc60491g00002 333 MobiDBLite consensus disorder prediction 21 40 - -
Stsc60491g00002 333 MobiDBLite consensus disorder prediction 99 124 - -
Stsc60491g00002 333 CDD ePHD 205 313 - -
Stsc60491g00002 333 Pfam PHD-finger 137 186 IPR019787 -
Stsc60491g00002 333 SUPERFAMILY FYVE/PHD zinc finger 128 189 IPR011011 -
Stsc60491g00002 333 ProSiteProfiles Extended PHD (ePHD) domain profile. 202 314 IPR034732 -
Stsc60491g00002 333 Pfam PHD-zinc-finger like domain 204 313 - -
Stsc60491g00002 333 PANTHER PHD FINGER PROTEINS 88 314 - -
Stsc60491g00002 333 ProSiteProfiles Zinc finger PHD-type profile. 134 187 IPR019787 -
Stsc60491g00002 333 MobiDBLite consensus disorder prediction 99 122 - -
Stsc60491g00002 333 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 122 191 IPR013083 -
Stsc60491g00002 333 ProSitePatterns Zinc finger PHD-type signature. 137 184 IPR019786 -
Stsc60491g00002 333 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 200 316 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60491g00002 Stsc-Chr60491 33251 34857 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60491g00002 22 331 C2H2 Transcription Factor Family AT3G14740 50.296 1.11e-100 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Stsc60491g00002 zf-HC5HC2H_2 1.5e-26 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60491g00002 K11380 - gmx:100802652 380.563