Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60490g00006 ATGGTGAGAACCCCTAGTTATTCTTGCGACAAAAGTGGAGTGAGGAAAGGTACATGGACTCTTGAGGAAGATATGAAGCTAACTGCTTATGTTACTAGATATGGCTGCTGGAATTGGAGCCAACTCCCAAAATATGCAGGCCTAGCAAGGTGTGGGAAGAGTTGCAGGTTGAGGTGGTTGAATTATTTAAGGCCTAATCTCAAAAGGGGGAACTTCACTCAACAAGAAGAAGATATTATCGTCAGATTGCACAATAAGCTCGGTAATAGATGGTCCTCAATTGCGACTGAATTGCCAGGAAGAACAGATAACGAAATCAAGAACTATTGGCACTCAACTCTCAAGAAGCGCTTGCAACAAAAAGAAGTTATTTCTAATAATAAAGAATCATCCAAATCATCATCATCATCATCACAAGAATGGAACCGAGAGAGGGACATGCAGGTGGTGGTGCTGAACAATAATAATGCGGTTGTTGATGATCATCATGATCCTTCAGAATGCAGTACTACCCGATCATCGCCACTATCTTCGTCTTCTAGTGACGAGTTTTGTTCTGTCACTACTTCAGATCACAACAACACATCAACAGCGAGTGATAAAGAAAATTTGGTGCTGCTGGAAGATGATGACTTGGCTTTTCTGGAAAAATTATGGACAGAAAATGAAAATTTGCCAAACAATAATTATAATTATAATAATAATAATCATGATCGCTTCCAGGAGAGTCCAGATTCTGCAGTGAAGATTCCGGATGCTAGTAGTGATGCCAATTTTGATTATCACATCGAGGCAATGATTCAAAACTTTTGGTCACAGCCATATATTAATGACATGTCACATATACAATGA 852 0.3932 MVRTPSYSCDKSGVRKGTWTLEEDMKLTAYVTRYGCWNWSQLPKYAGLARCGKSCRLRWLNYLRPNLKRGNFTQQEEDIIVRLHNKLGNRWSSIATELPGRTDNEIKNYWHSTLKKRLQQKEVISNNKESSKSSSSSSQEWNRERDMQVVVLNNNNAVVDDHHDPSECSTTRSSPLSSSSSDEFCSVTTSDHNNTSTASDKENLVLLEDDDLAFLEKLWTENENLPNNNYNYNNNNHDRFQESPDSAVKIPDASSDANFDYHIEAMIQNFWSQPYINDMSHIQ 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60490g00006 283 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 63 IPR017930 -
Stsc60490g00006 283 MobiDBLite consensus disorder prediction 169 197 - -
Stsc60490g00006 283 PANTHER MYB DOMAIN PROTEIN 55 8 252 - -
Stsc60490g00006 283 FunFam Transcription factor RAX3 9 69 - -
Stsc60490g00006 283 MobiDBLite consensus disorder prediction 157 197 - -
Stsc60490g00006 283 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Stsc60490g00006 283 SMART sant 68 116 IPR001005 -
Stsc60490g00006 283 SMART sant 15 65 IPR001005 -
Stsc60490g00006 283 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Stsc60490g00006 283 MobiDBLite consensus disorder prediction 124 143 - -
Stsc60490g00006 283 MobiDBLite consensus disorder prediction 121 143 - -
Stsc60490g00006 283 SUPERFAMILY Homeodomain-like 13 110 IPR009057 -
Stsc60490g00006 283 CDD SANT 71 114 IPR001005 -
Stsc60490g00006 283 Gene3D - 16 68 - -
Stsc60490g00006 283 Pfam Myb-like DNA-binding domain 69 112 IPR001005 -
Stsc60490g00006 283 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Stsc60490g00006 283 CDD SANT 18 63 IPR001005 -
Stsc60490g00006 283 Gene3D - 70 148 - -
Stsc60490g00006 283 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60490g00006 Stsc-Chr60490 72920 74535 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60490g00006 1 120 MYB Transcription Factor Family AT2G31180 65.000 4.65e-53 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc60490g00006 Myb_DNA-binding 7.6e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60490g00006 K09422 - gmx:100777107 251.521