Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60490g00003 ATGGTTAGAACACCTTCTTGTGACAAGAGTGGATTGAGGAAAGGTACTTGGACTCCTGAGGAAGATAGGTTGTTAATTGCCTATGTTACAAAGTATGGCAGCTGGAATTGGCGCCAATTGCCTAGGTTTGCAGGACTTGCTAGGTGTGGGAAGAGTTGTAGATTGAGATGGTCAGCCATTGCTGCAGAGCTGCCGGGGAGAACTGATAACGAAATCAAGAATCATTGGCACACTACGCTCAAGAAGCGCGTTCAAACCAATGAAGAATCCAAATCCACCAAATCCAAATCCAAAGAAAAGGAAATAACTCCATTGGTACCCACCATTTCCCAGATCTCAGGAGAGGGAAACATTACTACTACTATTTCTACTACTACTACTACTTCGCCATTGTCACCATTGTCTTCCTCAAGTGAATTCTCCTCCATAACTTCATGGGATAATAAAAGTCAAAATCTGGTTCTTGAAGACGATGATTTCACTTTTCTGGATGGAAGCTTCTGGATAGAAGAACCGTATCTTGCTGAAATCTTGCATGAACAAGAAGAAACAGTAGCAGCAACAGTGCCTAATAATAATAATAACAACAATAACAATGTGTTTGATCCATGTGAAATCTCAGTAGCCAATAAGAATGAAGAGTTACTATCAGAATTATCATCCAACAACAGTTCATCATCAGCAAGTTTGGTTGATCTGGAGAATGAGTTTGGGAGCTTCTTGATTGAACCAGCAACAATAATGATGGAAAGTTTTTGGACCCAGCCATATGTGTCTGAATGTGATGACGTGTCCCGTATGCCATTCATGGCTCCATCATCTGAATACTTTACAACGCTGTGTGGGTCAGATCCTTGGAGCACTCAAAGTACTACTCATTTGTATGATCAACATCTTAGCTTATTCCAATAA 912 0.4068 MVRTPSCDKSGLRKGTWTPEEDRLLIAYVTKYGSWNWRQLPRFAGLARCGKSCRLRWSAIAAELPGRTDNEIKNHWHTTLKKRVQTNEESKSTKSKSKEKEITPLVPTISQISGEGNITTTISTTTTTSPLSPLSSSSEFSSITSWDNKSQNLVLEDDDFTFLDGSFWIEEPYLAEILHEQEETVAATVPNNNNNNNNNVFDPCEISVANKNEELLSELSSNNSSSSASLVDLENEFGSFLIEPATIMMESFWTQPYVSECDDVSRMPFMAPSSEYFTTLCGSDPWSTQSTTHLYDQHLSLFQ 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60490g00003 303 SUPERFAMILY Homeodomain-like 14 81 IPR009057 -
Stsc60490g00003 303 SMART sant 13 82 IPR001005 -
Stsc60490g00003 303 Gene3D - 6 57 - -
Stsc60490g00003 303 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 84 IPR017930 -
Stsc60490g00003 303 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 57 - -
Stsc60490g00003 303 Gene3D - 58 85 - -
Stsc60490g00003 303 CDD SANT 16 80 IPR001005 -
Stsc60490g00003 303 ProSiteProfiles Myb-like domain profile. 9 80 IPR001005 -
Stsc60490g00003 303 Pfam Myb-like DNA-binding domain 14 57 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60490g00003 Stsc-Chr60490 61721 62954 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60490g00003 1 168 MYB Transcription Factor Family AT2G31180 39.500 3.41e-36 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc60490g00003 Myb_DNA-binding 1.1e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60490g00003 K09422 - gmx:778184 211.846