Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60490g00002 ATGAGAGGGGTTCGGTGTGAGAAAAGTGGGATGAGGAAAGGGACATGGACACCTGAAGAAGACAAGAAGTTGGTTGATTATGTTACTAGGTATGGCCACTGGAATTGGAAACTACTCCCCAAGTTCGCAGGTCTTGAAAGATGCGGCAAGAGTTGCAGGCTAAGATGGCTGAATTACTTAAGGCCAAACCTGAAAAGAGGAAACTATACTGAAGAAGAGGAAGAAACTATTGTGAAGCTGCACCGACGCTTAGGAAACAGATGGTCTGCCATTGCGGCTGAAATGCCAGGAAGGAGCGACAATGAAATAAAAAACCATTGGCACGCCAAACTCAAGAAGAGATTCCAATATCATAATGCCGTTGACTTAGTCAACCAATATGAGGACCAACATGATCAAGAACCAATTACTACTATAGGTGATGACACCACTTCTTCTCCAACTACTAGTCAACTCATCAATAATAATAATGATTCTTCTAACTCTTCCTCCTCATCAAGTGATCAATCCTACTCAATAACAATGAGCACGGAGCATAGCAATGATGTTAACAGCACTAATAATATTAATGTTATGGATATGGAAGATCATTATGGGGTTTCCTTTGTTGATTATGCATCGGACAGTAGCAAGAGCTTCTGGTTGGAGCTGCTTGATATGTCCTACTCACTTCCCAATAACTGA 684 0.4152 MRGVRCEKSGMRKGTWTPEEDKKLVDYVTRYGHWNWKLLPKFAGLERCGKSCRLRWLNYLRPNLKRGNYTEEEEETIVKLHRRLGNRWSAIAAEMPGRSDNEIKNHWHAKLKKRFQYHNAVDLVNQYEDQHDQEPITTIGDDTTSSPTTSQLINNNNDSSNSSSSSSDQSYSITMSTEHSNDVNSTNNINVMDMEDHYGVSFVDYASDSSKSFWLELLDMSYSLPNN 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60490g00002 227 SUPERFAMILY Homeodomain-like 10 107 IPR009057 -
Stsc60490g00002 227 CDD SANT 68 108 IPR001005 -
Stsc60490g00002 227 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 60 IPR017930 -
Stsc60490g00002 227 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Stsc60490g00002 227 CDD SANT 15 60 IPR001005 -
Stsc60490g00002 227 Gene3D - 13 65 - -
Stsc60490g00002 227 Pfam Myb-like DNA-binding domain 66 108 IPR001005 -
Stsc60490g00002 227 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Stsc60490g00002 227 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 5 215 - -
Stsc60490g00002 227 FunFam MYB-related transcription factor 12 65 - -
Stsc60490g00002 227 Gene3D - 67 137 - -
Stsc60490g00002 227 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 115 IPR017930 -
Stsc60490g00002 227 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Stsc60490g00002 227 SMART sant 12 62 IPR001005 -
Stsc60490g00002 227 SMART sant 65 113 IPR001005 -
Stsc60490g00002 227 MobiDBLite consensus disorder prediction 135 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60490g00002 Stsc-Chr60490 30382 34716 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60490g00002 2 181 MYB Transcription Factor Family AT2G31180 49.223 1.94e-57 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc60490g00002 Myb_DNA-binding 1.3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60490g00002 K09422 - gmx:100778518 247.284