Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60490g00001 ATGGTTAGAACCCCTTATCACTGTGAGAAAAGTGGAGTGAGGAAAGGAACATGGACACCAGAGGAAGACACCAAGTTGATTCATCATCTTTCTAAGTTTGGTTACCCCTCCAACTGGCGCCTGCTACCCAAAGCTGCAGGTCTTGCAAGGTGTGGAAAGAGCTGCAGATTCAGGTGGATGAATCATTTAAGGCCAGATGTCAAAAGAGGGAATTTCACACTAGAAGAAGATGACACTATACTCAGATTGCATAATCAGTTTGGTAATAGATGGTCCATGATTGCGTCTCACTTGCATGGAAGATCAGACAACGAGATTAAAAATCGGTGGAACTCCCACCTCAAGAAGCGATTCCAACACACTTCAGTCACCAAGTCAAACAATCATAATAACACCCTAATTGAATCAAAGGAAGAAGAGATAGTGAATAATAGTAGTAATAGTAATAATGCCACTACTGAGGACTACCCTACTAATAATCTTCACAATATTTCTCCAGCAGCTTCCTCACAAATCCATACATATGACGATGTTTTTCCATTGAGTGATTTTTTCAACACATCTGAGGTGGATCTTGCTGCACCATCTGATGAAAGTGACTATGCTAATTTCATGGATAATATGGAAGAGAGGTACATAATGCCAAATAATGGTTCGGATTATGTTTATTGGACTCATCAACCGGGTTGTTTAAGTCCAGTCTATGAGAATTCGCCGGTGGAGAGTGGTGATATTAAGGATGCGGTTCCATCCTCGTCATCTTCGGCAGTTCTTTTCAAGGCGGTCTCGTCTGTTTCATTGCCGGTGAAAGAGGTTCAGAATGTTAAGGGTTCTGCCGTTCCATCCATGGAAATCATCACTGGCAGTGCCTAA 873 0.4204 MVRTPYHCEKSGVRKGTWTPEEDTKLIHHLSKFGYPSNWRLLPKAAGLARCGKSCRFRWMNHLRPDVKRGNFTLEEDDTILRLHNQFGNRWSMIASHLHGRSDNEIKNRWNSHLKKRFQHTSVTKSNNHNNTLIESKEEEIVNNSSNSNNATTEDYPTNNLHNISPAASSQIHTYDDVFPLSDFFNTSEVDLAAPSDESDYANFMDNMEERYIMPNNGSDYVYWTHQPGCLSPVYENSPVESGDIKDAVPSSSSSAVLFKAVSSVSLPVKEVQNVKGSAVPSMEIITGSA 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60490g00001 290 FunFam Transcription factor RAX3 8 69 - -
Stsc60490g00001 290 CDD SANT 17 63 IPR001005 -
Stsc60490g00001 290 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 188 - -
Stsc60490g00001 290 Gene3D - 70 150 - -
Stsc60490g00001 290 CDD SANT 71 114 IPR001005 -
Stsc60490g00001 290 SUPERFAMILY Homeodomain-like 12 110 IPR009057 -
Stsc60490g00001 290 MobiDBLite consensus disorder prediction 125 164 - -
Stsc60490g00001 290 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Stsc60490g00001 290 SMART sant 68 116 IPR001005 -
Stsc60490g00001 290 SMART sant 14 65 IPR001005 -
Stsc60490g00001 290 ProSiteProfiles Myb-like domain profile. 10 63 IPR001005 -
Stsc60490g00001 290 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 63 IPR017930 -
Stsc60490g00001 290 Pfam Myb-like DNA-binding domain 15 63 IPR001005 -
Stsc60490g00001 290 Pfam Myb-like DNA-binding domain 69 114 IPR001005 -
Stsc60490g00001 290 Gene3D - 7 68 - -
Stsc60490g00001 290 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60490g00001 Stsc-Chr60490 17385 22464 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60490g00001 1 183 MYB Transcription Factor Family AT2G31180 49.215 7.90e-52 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc60490g00001 Myb_DNA-binding 9.6e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60490g00001 K09422 - gmx:106799185 191.815