Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60489g00007 ATGCTGCTTATCGCTGTCACACTCACTCTTTTCTTGTGGCTACTACCATCTCAGATTGAAGCTGTTGGTGCAAAAGTTGAAAGGCTTCCTGGTTTTGATGGACCACTTCCCTTTCATCTTGAAACTGGGTATATTGGGTTGGGGGATCCAGATGATGAGATGCAAGTTTTCTACTATTTTGTTAAATCAGAGAATGATCCTCAGAATGACCCTCTCTTACTATGGATCACCGGTGGCCCCGGATGTTCTTCATTTTCGGCACTTGTTTATGAATTAGACGCCAAGGTTGTGGATTTGATAACCCTGTGTCTGGTGGCTAACATTATTTTTGTGGATTTGCCAATGGGAACTGGCTACTCTTACACGAAAAATGTCCTTCGCCATCGAAGTGACTGGAAGATGGTTCACCAAACCCATGGGTTTATTAGAAAGTGGCTTGCTGAGAACCCGGAATTTCTTTCGAATAAGTTCTACATGGCAGCTGACTCATATTCCGGCATTCCTGTTCCTCCTATTACTCAAGAGATCGCAGACGGAAATGAAAGAGGTCTCGAACCCCGGATAAATCTACAGGGATATATACTAGGAAACCCTGTAACATCAGGATTAGAAGAAAATGATCGGATCCCGTATGTTCACGGAATGGGACTTATCTCTGATGAACTCTATTGGTCCTTGAAAAAAAATTGTAATGGGAACATTATAAATGTGGATTCTACAAACAAATTGTGTCTAAATGATATACAGTACTATAATAAGCTTCTTGAAAATATTGAGTTGGACAACATTTTGGGGATCTATTGTGCTGAAGAGAATCTCAAAGGAACAAGATGGAACCCCAGAAGATGTCTTGCTGAGAAGATTAAGGCCCCTTTGATTTCTTCTGTCACGCTGCCGGATATGCGCTGCCGAAGTTACGGTTTCTTCCTTTGTACGGAATGGATGAATGACCCGTCTGTTCGCAAGGCACTGCATATTCGAGAGGGATCTATAGGGGAATGGATTCGGTGCTACAAGGACGATTATGTATTTGACATCCCTAGCAGCATTCCGTTTCATGCAAATCTCAGTGCCAAAGGCTACCCTTCTTTGATATACAGTGGGGATCACGACGCAGTCGTTCCTTTCTCATCGACTCAACTATAG 1146 0.4276 MLLIAVTLTLFLWLLPSQIEAVGAKVERLPGFDGPLPFHLETGYIGLGDPDDEMQVFYYFVKSENDPQNDPLLLWITGGPGCSSFSALVYELDAKVVDLITLCLVANIIFVDLPMGTGYSYTKNVLRHRSDWKMVHQTHGFIRKWLAENPEFLSNKFYMAADSYSGIPVPPITQEIADGNERGLEPRINLQGYILGNPVTSGLEENDRIPYVHGMGLISDELYWSLKKNCNGNIINVDSTNKLCLNDIQYYNKLLENIELDNILGIYCAEENLKGTRWNPRRCLAEKIKAPLISSVTLPDMRCRSYGFFLCTEWMNDPSVRKALHIREGSIGEWIRCYKDDYVFDIPSSIPFHANLSAKGYPSLIYSGDHDAVVPFSSTQL 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60489g00007 381 PRINTS Carboxypeptidase C serine protease (S10) family signature 111 121 IPR001563 GO:0004185|GO:0006508
Stsc60489g00007 381 PRINTS Carboxypeptidase C serine protease (S10) family signature 145 170 IPR001563 GO:0004185|GO:0006508
Stsc60489g00007 381 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 25 380 IPR001563 GO:0004185|GO:0006508
Stsc60489g00007 381 SUPERFAMILY alpha/beta-Hydrolases 26 380 IPR029058 -
Stsc60489g00007 381 Pfam Serine carboxypeptidase 30 380 IPR001563 GO:0004185|GO:0006508
Stsc60489g00007 381 Gene3D alpha/beta hydrolase 32 381 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60489g00007 Stsc-Chr60489 54248 58060 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60489g00007 310 380 Calmodulin-binding Proteins AT2G22960 58.333 3.94e-19 82.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60489g00007 K16296 - gmx:100780069 478.404