Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60489g00002 ATGGCAAAGCAAAAGAACGTTACTTTGCATGAAAACTCTGATGATGAAGAACCGCAGGTTCCCGTGACTCAGCCAGAGGAAGAAGAAGATAGCACCGAGGAGGAGGACGAAACAACTTCCTCCGACGAAGAAGACGATGACGGAGAAGACGACCGGCATGAGCTTGTTATCAGGAAGCCTCAGCCGCAAATCAGTTCCAAACCCTCGTCTTCCTCTTCCGAAGACGAGACAGATTCCGAGCCCGAGCCTCAGCCCGAGCCTCAGAAAGCTAAACCCTCTTCAAAGGCGAAGTCTCAATCTTCAACACCAGCGAGTCAAGCCAAATCTGGTGTGAAGCGCGGAGCCGAGAACAGCATCGAACACTCAAACCAGTCAAAACGCGGGAAGAAGGCTGTGGAGGATCATGCGGCTGGCTCTGATGATGAAGATCTGAAGAAATCGCGTGACGAGTCCAAATCCGCGTTTCAGAGGGTTTTCAGCGAGAAAGATGAGATAGGTATCTTGAAGGGCATGGCTGAGTTCACCTCCAAAACAGGGAAGGATCCTCATAAATGCTCTGATGAATTTTACGAATTTATGAAGGGATCTAAGTTGATTAGCTCCAATGCATCATCCAACCAATTGAAGGACAAGATCCGCCGGCTGAAGAAGAAGTTCGAGAACAATCTGAAGAAAGGGAGGAGCGGCAAAGGGGCATTCTTGTCAAAGCCGCACGAGTTGGAAGCCTTCAATTTGTCAAAGAATATTTGGGGTGGCAGCGGCGGCGGCGGCGGCGGCGGCGAAGCAGGGAGCAATGAGACTTCGAAGAATGTTAAGGTTAATAATGAGAAGGCTGTGAAGAGTACCCCCAAGAAGGAGAATGGCAGCAAGAAGGCGATAGTGCCCCAATCGAATGGGAAACCTGAAGTGAAGTCCAAACTGAATTCTGAAGTTTTGGATTCAAATGAATGTAAAGAGGTGGATGAATTGCCTGAGACTAGTTTAGCTTTGACATCATTGATGAGGTATGATGGGTCTTTTGGTAAGACTTATGGCAAAGACTATATTAGGAATGGATTAGAGAAACTTGGAGCCTCGAAGAGGGAAGAGTTAGAGGGTAGGTGGAGGAAGTTGCAAGAAGCTGAAAATGAATTGTACGCCCAGACTGCAGAATTCTATGCAGAACAAATTAAGTTAATTTTTCAAGCAAATAAATCGTCCTCCTAG 1206 0.4726 MAKQKNVTLHENSDDEEPQVPVTQPEEEEDSTEEEDETTSSDEEDDDGEDDRHELVIRKPQPQISSKPSSSSSEDETDSEPEPQPEPQKAKPSSKAKSQSSTPASQAKSGVKRGAENSIEHSNQSKRGKKAVEDHAAGSDDEDLKKSRDESKSAFQRVFSEKDEIGILKGMAEFTSKTGKDPHKCSDEFYEFMKGSKLISSNASSNQLKDKIRRLKKKFENNLKKGRSGKGAFLSKPHELEAFNLSKNIWGGSGGGGGGGEAGSNETSKNVKVNNEKAVKSTPKKENGSKKAIVPQSNGKPEVKSKLNSEVLDSNECKEVDELPETSLALTSLMRYDGSFGKTYGKDYIRNGLEKLGASKREELEGRWRKLQEAENELYAQTAEFYAEQIKLIFQANKSSS 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60489g00002 401 MobiDBLite consensus disorder prediction 119 162 - -
Stsc60489g00002 401 MobiDBLite consensus disorder prediction 247 306 - -
Stsc60489g00002 401 MobiDBLite consensus disorder prediction 1 162 - -
Stsc60489g00002 401 MobiDBLite consensus disorder prediction 20 50 - -
Stsc60489g00002 401 Pfam Protein of unknown function, DUF573 155 251 IPR007592 GO:0006355
Stsc60489g00002 401 Coils Coil 205 225 - -
Stsc60489g00002 401 PANTHER BNAANNG10740D PROTEIN-RELATED 24 395 IPR007592 GO:0006355
Stsc60489g00002 401 MobiDBLite consensus disorder prediction 91 118 - -
Stsc60489g00002 401 MobiDBLite consensus disorder prediction 263 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60489g00002 Stsc-Chr60489 7988 9193 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60489g00002 98 399 GeBP Transcription Factor Family AT4G25210 32.177 2.05e-25 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GeBP Stsc60489g00002 DUF573 7.3e-29 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60489g00002 - - adu:107494693 350.903