Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60488g00009 ATGTCATCACACACAGCTGCCACGGAGGCACCGGAGTCCCAAGCGCCGCTCCTCCGCTCCCGCCACGGCAACTCCGATGCCTCCGCCGCGGCTCGGGCGCCAACCCTCGCGCTTCTCCTGGGCCGAGCCACGGGCCGCCGCGGCCCATCCATGCTGGTCCGCGAGACGGCAGCACGGGAGCTGGAAGAGCGCCGCGCCGACTGGGGATACTCGAAGCCGGTCGTGGCGCTCGACATGTCGTGGAACATGGCCTTCGTGGTGGTCTCGGCGGTGATGCTTGCGCTCACGTTGGATGAGCGGCCGAACACGCCGATCCGAGTGTGGATCGTCGGGTACGGGCTGCAGTGCCTGCTTCACGTGGTGCTGGTGTGGCTTGAGTACCGGCGCCGGAACCAAAGGAATTCGCGGCGTCAGCGAAGGACGAGTGGCATAGAGAGCGAGGATACTGATAGCTTTGATGATGCCAACGATAGTGACGATGACGATGTTGCTGATGGAAACTCTTCTCGCCCTGGCAGATTCACAAAACGATGTGAGTCGTTTAATACGGGGATTTCATTCCTTTGGTGGATTGTGGGATTTTACTGGGTTGTCTCTGGTGGTGATATACTTCTGCAAGATGCCCCACGTTTATACTGGTTGGCTGTTGTGTTTTTGGCATTTGATGTCTTCTTTGCTATCTTTTGTGTTGTTTTGGCATGCTTGATTGGCATTGCTCTCTGTTGTTGTTTGCCTTGCATCATTGCAATCCTCTATGCTGTTGCGGGACAGGAAGGTGCATCAGAAGCAGATCTCAGTATAATTCCAAAATACAGATTTGAAATTTTAAGCAATGAGGAAAAGCCTAATGGGGGAGCTGGAAGAATGGTTCCCATTGAAACAAGCAGTGGATATGTGGCAAACGAACGAACACTTTTACCTGAGGATGCGGAATGTTGCATATGCCTTTGTCCTTACGAAGATGGAACAGAGCTCCATGCTCTTCCGTGCAATCATCATTTCCATTCATCATGCATAGTGAAATGGCTAAAGATGAATGCAACTTGTCCTCTTTGCAAGTACAATATTCTCAAAGGAAATGAACAAGTGTGA 1092 0.5256 MSSHTAATEAPESQAPLLRSRHGNSDASAAARAPTLALLLGRATGRRGPSMLVRETAARELEERRADWGYSKPVVALDMSWNMAFVVVSAVMLALTLDERPNTPIRVWIVGYGLQCLLHVVLVWLEYRRRNQRNSRRQRRTSGIESEDTDSFDDANDSDDDDVADGNSSRPGRFTKRCESFNTGISFLWWIVGFYWVVSGGDILLQDAPRLYWLAVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAVAGQEGASEADLSIIPKYRFEILSNEEKPNGGAGRMVPIETSSGYVANERTLLPEDAECCICLCPYEDGTELHALPCNHHFHSSCIVKWLKMNATCPLCKYNILKGNEQV 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60488g00009 363 MobiDBLite consensus disorder prediction 148 162 - -
Stsc60488g00009 363 FunFam E3 ubiquitin protein ligase RIE1 292 360 - -
Stsc60488g00009 363 SUPERFAMILY RING/U-box 299 357 - -
Stsc60488g00009 363 SMART ring_2 312 352 IPR001841 -
Stsc60488g00009 363 ProSiteProfiles Zinc finger RING-type profile. 312 353 IPR001841 -
Stsc60488g00009 363 CDD RING-H2_PA-TM-RING 311 353 - -
Stsc60488g00009 363 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 291 361 IPR013083 -
Stsc60488g00009 363 MobiDBLite consensus disorder prediction 136 169 - -
Stsc60488g00009 363 PANTHER TARGET OF ERK KINASE MPK-1 43 361 - -
Stsc60488g00009 363 Pfam Ring finger domain 311 353 IPR001841 -
Stsc60488g00009 363 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60488g00009 Stsc-Chr60488 45970 52837 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60488g00009 6 362 C3H Transcription Factor Family AT1G68070 66.022 2.69e-175 489
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60488g00009 - K13148 aip:107643865 603.979