Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60486g00016 ATGCACAGAGTTCTGGGAAATGGTAAAGAGAGATATTCTGATGGGAATTCTAATCGTGTCAAGCAACTACTTAAAGAGATTGAAAAGTATCTTCAAAAGATTGGTTCCAAGCTACAAGAAGCAAAGACTGCAGCTGGTCGGTTTGAACAGGATATTGATGAGGCACGATGTGGCATTTTTCTTGAGAAGAGTGAATCTACTCTTGAAAAAGAGGATGAAGCTGATCAGGCAAAGCATTATCTGGAAAGTAATGAGAAATATTATATGATGGAACACAGGTGGCTTGTTTCCTTATATAACAACCACTTGAATGGAATCCTTGCTGATGAATTGGGACTGGATATAACTGATCAGGTTATTTCTCTAATTTGCTACCTGATGGAAAGTAAAAATGATAGGGGGTCATTTCTTGTGGTTGTACCCTCTTCAGTATTACCTGGCTGGGATTCATAA 453 0.3841 MHRVLGNGKERYSDGNSNRVKQLLKEIEKYLQKIGSKLQEAKTAAGRFEQDIDEARCGIFLEKSESTLEKEDEADQAKHYLESNEKYYMMEHRWLVSLYNNHLNGILADELGLDITDQVISLICYLMESKNDRGSFLVVVPSSVLPGWDS 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60486g00016 150 PANTHER SNF2/RAD54 HELICASE FAMILY 15 150 - -
Stsc60486g00016 150 Pfam SNF2-related domain 101 148 IPR000330 GO:0005524|GO:0140658
Stsc60486g00016 150 Gene3D - 58 150 IPR038718 -
Stsc60486g00016 150 Coils Coil 20 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60486g00016 Stsc-Chr60486 56308 57650 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Stsc60486g00016 SNF2_N 1.4e-07 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60486g00016 - - aip:107635865 223.016