Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60486g00005 ATGGCCTTGAAAGAATTAAGTTGTCCCACTTTTGAGCTATGTCTTTCCTTGTTTTCTACCATTATTACTATTATTATTGTGCTTAAGCTAAGAAGTGTGAGAGTGAAAAGCAAAGAGAATATTGTTACTCTGCCTCCATCACCAAGAAAGTTACCCATAATTGGGAATCTTCATCAGATAGGAGCACTGCCATATCGTTCCTTCAAAGGCCTATCAGAGAAGTACGGTGATGTGATGTTGTTACAGTTGGGGCACATTCCAACCGTGGTGGTTTCATCAGCACAAGTGGTGAACGAAATCATGAAAGGTAACGACTTAGCACTCTCGAACCGAGGCCAAAGCAGAGCCACGAATATCTTGCTGTACGGATCCAATGACATTGGTTTTGGAAACTACGGTGAAAGGTGGAAGCAGAAAAGAAAGATATGCGTGCGTGAACTGTTGAGCCCCAAGATGGTTGAGTCAGAGTCGATTCGTTTGGTGAGAGAAGGGGCAGTTGCAGAATTGGTTGACAAGGTACGCGAAGCTGCTGCTGCTGCAGGATCAGTGAATTTGAGTGAGTTGCTCGTTGAAGCAGCTAACAACATCATTTGTAACTCTGCTCTTGGACTAAAGAACGACGAAAAAGGTGTTCGTCGCAAACACAGTGTGAAGGCGTTGGCAAAGAAGGTGATGTTTCAGGTTGGAGTTGTCACCCTTGGGGATCACTTTCCTTGGTTGGCTTGGCTCGATGTTCTCACTGGCCACCTTCAACAATTCAAGGCCACTTTTCAAGCCTTGGATCCCTTGTTTGACGACCTCATTGCTGAGCGCACCAGTTCCATCATCAACAGAGAAACACCAGCTGCTCATCAAACAGATTTTGTCGACATCCTCATCCAAATTCAACACCAACAGCTTCCCAATAATAATGCCATTTCCAACAACGACATCAAATCAATTCTCCTGGACATGTTCGCAGCGGGAAGTGAGACAACTTCAGTAACAGTAGAATGGGCAATGTCAGAGCTAATGAAGAATCCAATAGAACTGAAAAAAGTGCAGGAAGAGGTGAGAAGGGTTGTGGGGCAGAAATCAAATGTAGAAGAGAGCAAGGTGAAGCAAATGGAGTACCTAAAATGTGTGGTGAAGGAGACTCTAAGGTTGCATCCACCTGCACCTCTCTTGGTTCCAAGAGTGGCAACACACCATGTGAAACTCGGAGGATATGACATCCCAGCAAAGACAAGATTGTACGTGAATGTATGGGCTATCCAGAGGGACCCTCAAGTGTGGGACAACCCGGAAGAGTTCATTCCGGAGAGGCATCGCCATAGCCATGACACTCAAGACTTTACGCTTATCCCATTTGGTTTCGGCAGAAGAGGCTGCCCTGGAATGAATTTTGGCCTTGCTGCTGTTGAGTATATGCTCGCTAACCTTCTCTATTACTTCAATTGGGAATCTCCACAAGCACAAGCCATAGATATGACTGAGATATTTGGCCTCGTTGCCTCCAAAAGAATCCCTCTTCATCTTAAGCCTATCCCATTCTCATTCCAATGA 1545 0.4524 MALKELSCPTFELCLSLFSTIITIIIVLKLRSVRVKSKENIVTLPPSPRKLPIIGNLHQIGALPYRSFKGLSEKYGDVMLLQLGHIPTVVVSSAQVVNEIMKGNDLALSNRGQSRATNILLYGSNDIGFGNYGERWKQKRKICVRELLSPKMVESESIRLVREGAVAELVDKVREAAAAAGSVNLSELLVEAANNIICNSALGLKNDEKGVRRKHSVKALAKKVMFQVGVVTLGDHFPWLAWLDVLTGHLQQFKATFQALDPLFDDLIAERTSSIINRETPAAHQTDFVDILIQIQHQQLPNNNAISNNDIKSILLDMFAAGSETTSVTVEWAMSELMKNPIELKKVQEEVRRVVGQKSNVEESKVKQMEYLKCVVKETLRLHPPAPLLVPRVATHHVKLGGYDIPAKTRLYVNVWAIQRDPQVWDNPEEFIPERHRHSHDTQDFTLIPFGFGRRGCPGMNFGLAAVEYMLANLLYYFNWESPQAQAIDMTEIFGLVASKRIPLHLKPIPFSFQ 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60486g00005 514 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 450 459 IPR017972 GO:0005506|GO:0016705
Stsc60486g00005 514 Gene3D Cytochrome P450 30 507 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc60486g00005 514 PRINTS P450 superfamily signature 448 457 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc60486g00005 514 PRINTS P450 superfamily signature 374 385 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc60486g00005 514 PRINTS P450 superfamily signature 321 338 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc60486g00005 514 PANTHER CYTOCHROME P450 71B11-RELATED 27 509 - -
Stsc60486g00005 514 PRINTS E-class P450 group I signature 330 356 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc60486g00005 514 PRINTS E-class P450 group I signature 447 457 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc60486g00005 514 PRINTS E-class P450 group I signature 310 327 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc60486g00005 514 PRINTS E-class P450 group I signature 72 91 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc60486g00005 514 PRINTS E-class P450 group I signature 414 438 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc60486g00005 514 PRINTS E-class P450 group I signature 457 480 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc60486g00005 514 PRINTS E-class P450 group I signature 373 391 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc60486g00005 514 PRINTS E-class P450 group I signature 192 210 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc60486g00005 514 Coils Coil 344 364 - -
Stsc60486g00005 514 CDD CYP71-like 74 504 - -
Stsc60486g00005 514 FunFam Cytochrome P450 83B1 32 507 - -
Stsc60486g00005 514 Pfam Cytochrome P450 45 495 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc60486g00005 514 SUPERFAMILY Cytochrome P450 45 510 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60486g00005 Stsc-Chr60486 13952 16091 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60486g00005 45 508 Cytochrome P450 AT3G26330 41.737 5.19e-121 362
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60486g00005 K20617 - gmx:100785621 554.673