Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60485g00015 ATGAACGGTTTAAGAGGTGAAAGAGCTCCTCTCTTGGAAGCTGAGCGCGGCGGAAGGGGAAAGAGGGATGGAGCTTCTGCTGATCAAGCCTCAGACCTTGAGCACGGTGACGGAGTGCCGGCCGCGAATGTGGGATTCTTCCGAGTGTTTTCGCTTGCAAAACCAGAGGCTGGAAATTTGGTGATTGGTACAGTGGCTTTGTTGATCGCGGCTACATCAAGTATCTTAGTTCAAAAATATGGTGGCAAGATAATTGACATTGTGTCTGGAGATCTAAGAACTCAAGAGCAGAGAGATGAGGCTTTAGATGCTGTTAAGAACACCATTATAGAGATCTTTCTAATTGTGTTTATTGGTTCAATTTGCACGGCACTTCGAGCTTGGCTATTTTCTTCTGCTAGTGAAAGAGTTGTCGCGCGGCTAAGAAAGGATTTGTTCAGTCACCTTGTAAACCAGGAGATTGCTTTCTTCGATGTCACTCGAACAGGGGAACTCTTAAGTAGGTTGTCGGAAGATACACAGATCATAAAGAATGCCGCAACTACCAATCTTTCTGAGGCCTTGAGGAACTTAGCAACGGCACTTATGGGTCTCAGCTTCATGTTTGCAACGTCATGGAAGTTAACATTGTTGGCTTTGGCTGTCGTGCCGGTAATTTCTGTTGCTGTCCGTAAATTTGGACGTTTCCTGCGTGAACTATCTCACAAAACTCAAGCTGCAGCTGCAGTAGCATCTTCAATTGCTGAGGAATCATTTGGTGCCATAAGAACAGTAAGATCTTTTGCCCAAGAAGATTATGAAATTTCACGCTACTCCGAGAAAGTTAGTGAAACACTCAGTCTTGGCCTTAAGCAAGCTAAAGTCGTTGGGTTCTTTTCTGGAGGCCTTAATGCAGCATCTACACTCTCTGTAATTATAGTAGTTATATATGGAGCTAGCTTGACAATCAAGGGTGCCATGTCCTCGGGTGATCTCACATCTTTCATTCTTTATAGTCTCTCAGTGGGATCTTCTATATCTGGCTTGTCGGGATTGTATACAGTAGTTATGAAAGCTGCAGGTGCTAGCCGAAGGGTATTTCAACTTTTGGATCGAGAGTCGTCAATGCCTAAGCCAGGAGATAAGTGTCCTCTTGGTGATCAAGATGGGGAAGTGGAACTCAATGATGTATGGTTTTCCTATCCATCACGGCCTAATCACATGGTGCTCAAGGGCATTACAATTAAACTGCTGCCTGGCTCAAAGGTTGCTCTTGTTGGTCCAAGTGGCGGCGGAAAGACAACAATAGCTAACTTGATTGAAAGATTTTATGACCCAACCAAAGGAAATATTTTGCTGAATGGAGTTCCTCTGGTAGAAATATCTCACAAGCATTTGCACAGAAAGATCAGTATAGTGAGTCAGGAGCCTACACTGTTCAACTGTTCCATAGAGGAGAACATAGCCTATGGTTTTGATGGCAAAAAAATGGCCAATGCACATGAATTTATATCAAAGTTCCCAGAGAAATACAAGACCTTTGTTGGAGAGCGTGGGGTACGGCTTTCGGGAGGGCAGAAACAGAGAATAGCAATTGCTAGAGCCCTGCTCATGGACCCCAAAATTCTCCTCCTGGATGAAGCCACCAGTGCCCTAGATGCCGAAAGCGAGTACCTAGTGCAGGATGCCATGGATTCTCTAATGAAGGGAAGAACTGTTCTAGTCATTGCTCATAGATTATCAACCGTCAAAACTGCTGACACTGTAGCGGTTATCTCCGATGGCCAAGTAGTCGAGAGTGGCACGCACGACGAGCTTCTCAGCAAGAATGGTGTCTATACTGCCTTAGTCAGGAGGCAACTGCAGACAGCAAAAACTGAAGATGTAGTTTAG 1872 0.4487 MNGLRGERAPLLEAERGGRGKRDGASADQASDLEHGDGVPAANVGFFRVFSLAKPEAGNLVIGTVALLIAATSSILVQKYGGKIIDIVSGDLRTQEQRDEALDAVKNTIIEIFLIVFIGSICTALRAWLFSSASERVVARLRKDLFSHLVNQEIAFFDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLATALMGLSFMFATSWKLTLLALAVVPVISVAVRKFGRFLRELSHKTQAAAAVASSIAEESFGAIRTVRSFAQEDYEISRYSEKVSETLSLGLKQAKVVGFFSGGLNAASTLSVIIVVIYGASLTIKGAMSSGDLTSFILYSLSVGSSISGLSGLYTVVMKAAGASRRVFQLLDRESSMPKPGDKCPLGDQDGEVELNDVWFSYPSRPNHMVLKGITIKLLPGSKVALVGPSGGGKTTIANLIERFYDPTKGNILLNGVPLVEISHKHLHRKISIVSQEPTLFNCSIEENIAYGFDGKKMANAHEFISKFPEKYKTFVGERGVRLSGGQKQRIAIARALLMDPKILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVKTADTVAVISDGQVVESGTHDELLSKNGVYTALVRRQLQTAKTEDVV 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60485g00015 623 CDD ABC_MTABC3_MDL1_MDL2 385 613 - -
Stsc60485g00015 623 Gene3D ABC transporter type 1, transmembrane domain 112 382 IPR036640 GO:0005524|GO:0016020
Stsc60485g00015 623 SUPERFAMILY ABC transporter transmembrane region 48 366 IPR036640 GO:0005524|GO:0016020
Stsc60485g00015 623 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 385 612 IPR003439 GO:0005524
Stsc60485g00015 623 FunFam ABC transporter B family member 25 383 615 - -
Stsc60485g00015 623 CDD ABC_6TM_AtABCB27_like 63 359 - -
Stsc60485g00015 623 MobiDBLite consensus disorder prediction 9 30 - -
Stsc60485g00015 623 ProSitePatterns ABC transporters family signature. 515 529 IPR017871 GO:0005524|GO:0016887
Stsc60485g00015 623 PIRSF ABC_prm/ATPase_B 15 623 - -
Stsc60485g00015 623 FunFam ABC transporter B family member 25 112 382 - -
Stsc60485g00015 623 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 376 613 IPR027417 -
Stsc60485g00015 623 MobiDBLite consensus disorder prediction 1 36 - -
Stsc60485g00015 623 SMART AAA_5 412 596 IPR003593 GO:0016887
Stsc60485g00015 623 Gene3D - 383 619 IPR027417 -
Stsc60485g00015 623 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 43 618 IPR039421 -
Stsc60485g00015 623 Pfam ABC transporter 403 543 IPR003439 GO:0005524
Stsc60485g00015 623 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 61 351 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc60485g00015 623 Pfam ABC transporter transmembrane region 60 333 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60485g00015 Stsc-Chr60485 94163 98931 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60485g00015 62 613 Calmodulin-binding Proteins AT2G36910 37.088 7.74e-100 329
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60485g00015 - - var:108320153 1066.99