Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60485g00012 ATGGAGCCTCTTTGGTTACCAACCAGAGCCAGTGGATCTGTTGTAGCAACCTTACTTCTGTTACTCTTCTCTTGCACCACATTCACTTCCACAGAAGCTTATGATGCACTTGATCCAACTGCCAATATAACAATCAAATGGGATATCATAACTTGGACTGGAGATGGCTATGTAGCTGTTGTTACAATGTACAACTTTCAACAATATCGCCATATCCAAGCGCCTGGATGGACCTTAGGGTGGACATGGGCTAAAAGGGAAGTAATTTGGAACATGCTTGGAGGCCAAACCACAGAACAAGGGGATTGTTCAAGGTTCAAAGGGAGCATCCCACACTGCTGCAAGAAAGATCCATCTGTAGTGGATTTACTTCCAGGAGCACCTTACAATCAGCAGGTTGCCAATTGCTGCAAAGGCGGCGTCTTGAATGCCTGGGCTCAGGACCCTGAAACTGCCGTTGCTTCCTTCCAACTCATCGTCGGTTCGGCTGGAACAACTAACAAAACGGTTAGAGTGCCTAAAAATTTCACCTTGAAAGCACCCGGCCCGGGCTATACTTGTGGCCCTGCAAAGATTGTGAGGCCAACAAAATTTAGTACCAATGACAAGAGGAGAACCACTCAGGCCATGATGACATGGAATGTTACCTGCACATATTCTCAATTCCTGGCTCAAAAGACTCCAACTTGCTGCGTTTCGCTCTCATCCTTCTATAACAACACAATAGTCAACTGCCCAACTTGTACCTGTGGCTGTCAAAACAAAAGAGAACCTGGAAGTTGTGTAGATCCAAAGTCTCCGCATTTAGCTTCAGTTGTTTCACCACCAAGCAGAGCCTTGAATCCACCTCTAGTCCAGTGTACAAGCCATATGTGTCCGATTCGAGTGCACTGGCATCATCCCAATTTTGACAATGTGACACAGGTTTTCAGCTTTAACTACAAGCCACTCACACCTTATGAAGGCTTAAATGATACCGGTATGCTATGGGGTGTGAAGTTCTACAATGATTTGTTGGTTTCAGCTGGAGCAATTGGGAATGTGCAATCAGAACTGTTATTTAGGAAAGACAAATCAAGCTTCACATTTGATAAAGGATGGGCATTCCCAAGAAGGATCTATTTCAATGGAGACAACTGTGTGATGCCACCTCCAGATGCATACCCTTGGCTACCAAATGCAAGTTCAAGACTAGTTCTCTCTTTGCTAGGTGCTCTCACTGGGATTCTAGCTTCTTTTCTAGTATTTGAATGTTAA 1257 0.4471 MEPLWLPTRASGSVVATLLLLLFSCTTFTSTEAYDALDPTANITIKWDIITWTGDGYVAVVTMYNFQQYRHIQAPGWTLGWTWAKREVIWNMLGGQTTEQGDCSRFKGSIPHCCKKDPSVVDLLPGAPYNQQVANCCKGGVLNAWAQDPETAVASFQLIVGSAGTTNKTVRVPKNFTLKAPGPGYTCGPAKIVRPTKFSTNDKRRTTQAMMTWNVTCTYSQFLAQKTPTCCVSLSSFYNNTIVNCPTCTCGCQNKREPGSCVDPKSPHLASVVSPPSRALNPPLVQCTSHMCPIRVHWHHPNFDNVTQVFSFNYKPLTPYEGLNDTGMLWGVKFYNDLLVSAGAIGNVQSELLFRKDKSSFTFDKGWAFPRRIYFNGDNCVMPPPDAYPWLPNASSRLVLSLLGALTGILASFLVFEC 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60485g00012 418 PIRSF COBRA 9 299 IPR006918 GO:0010215|GO:0016020
Stsc60485g00012 418 PIRSF COBRA 300 418 IPR006918 GO:0010215|GO:0016020
Stsc60485g00012 418 PANTHER PROTEIN COBRA 22 299 IPR006918 GO:0010215|GO:0016020
Stsc60485g00012 418 Pfam COBRA-like protein 57 220 IPR006918 GO:0010215|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60485g00012 Stsc-Chr60485 72068 74701 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60485g00012 19 414 COBRA Gene Family AT3G02210 71.163 0.0 648
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60485g00012 - - gmx:100811581 746.888