Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60485g00009 ATGGAATCTTCTTGGGGTTATGTTACTGAAGAAGAAAAGGGTTATGTCTCCAATGATTCACTTTCTGCTGCTGCTGCTGTTCCTCCTCCTCCTAGCACCCTTGTGAGAAGCAAAAGTTCCTTCCTTGGATGGGAACTGAAAACCCCATCTTCTAGCTTTGACAATCAATGCTTTGAGGAGCTTGGTTTCCCTGAATTGCTGGGAAAACCATTGTTTAATGATCTAATTGGAGGTAGTGGACATGGTGGCAGAATCACTAGTAGTAGTAGTAGTAATAATAGCACTACTACCACTGTTATGGACTCTAGTAGTGGCCGTGATTCCCTCATTGATTTGAAGCTTGGAAGGTTTGGTGATCATGGTGATGTTAATGTTAATGTTGCATCATTTTCCAAAGGAGCACCTGTTCTGTGTTCTTCTGTGTCGTCCACGGCCCCGAAGAGACCTCGAGCCTCTTCGGGTTTGCACTCGCAGACCGCTTACTGTCAAGTGTATGGCTGTAACAAGGATCTCAGCTCCTCTAAAGATTACCACAAGAGGCACAAAGTTTGTGAGGTTCATTCCAAGACTGCTGTAGTTATAGTCAATGGCGTTGAGCAAAGGTTTTGTCAGCAATGTAGTAGGTTTCATTTGCTGGCTGAATTCGACGATGGTAAGCGCAGCTGTCGCAAACGCCTCGCAGGACATAACGAGCGGCGGAGAAAACCGCAAGCAGGTATTCCTTCTGGAAAGGCTGCAAGGTTGCTTCAGCCATGTGGTAGTGATAGCAGATTCCAGGGGACCATGCTATCATCAGCATCTTTTATCTCCTCAGATTCGGATAAGCACGGAATGAGTGGCTTTTGGAGACCCGGAAAAGCAGAACATGGGTCTGGTTTTTGGCATCCTCAGAACTCAAGATCTCTTTTCCCTTCTTCATACAATGGAAAACAATTTCCCTTTCTTCAGGAAAGTGGTGCTGCTACAACAACCAGTGAAAGCATCTTCTATGAAAACACTAACCACTATAAGCCTGTCCTTGCGGCCCAGCATTCGGGTTCAAGACCACTGTTTCAGAACAGCTCCTTGGGAAGCGAGGACTTCAATGTTTTCGATACATCATCAACTGTTCAAGGATTGTCGGGGATTTCGGACTCGTGTTGTGCTCTCTCTCTTCTGTCATCTCAATCCCAAAACTCTTCAAGCCAATCGTCAGGAATTCCCTTCGCTCCCCCAATGGTTAGTCCAAGCAGCCATGGAAATCATTGCAGCATAAGTGAGGTCTCTGTAAAGATAGGAATGAGCTCACAAACTTCTTCGTGCCGGGTGTATGATAGGTTTCCGTCGTCATTGAATCCTGCAACTGGTGGAAGCCAGCTTAGTCCTATACTTATACCAGACAACAACAATATAGTCAACTTCGAAATGGCAGATCGGATATTCCAAGGTTCAGACTTCGTTAATGCTAGAGATCGTCTTTCCTGTGAAGATGGAGCAACAATTGACTTGCTACAGCTTTCATCGCAGCTTCAGCGAGTCGAGCATCAAAGGCAATCCTTGCAGGTTAAGCAAGAAAATGATTCTTCCTGCACTCTCCGGATTACTTAA 1587 0.4549 MESSWGYVTEEEKGYVSNDSLSAAAAVPPPPSTLVRSKSSFLGWELKTPSSSFDNQCFEELGFPELLGKPLFNDLIGGSGHGGRITSSSSSNNSTTTTVMDSSSGRDSLIDLKLGRFGDHGDVNVNVASFSKGAPVLCSSVSSTAPKRPRASSGLHSQTAYCQVYGCNKDLSSSKDYHKRHKVCEVHSKTAVVIVNGVEQRFCQQCSRFHLLAEFDDGKRSCRKRLAGHNERRRKPQAGIPSGKAARLLQPCGSDSRFQGTMLSSASFISSDSDKHGMSGFWRPGKAEHGSGFWHPQNSRSLFPSSYNGKQFPFLQESGAATTTSESIFYENTNHYKPVLAAQHSGSRPLFQNSSLGSEDFNVFDTSSTVQGLSGISDSCCALSLLSSQSQNSSSQSSGIPFAPPMVSPSSHGNHCSISEVSVKIGMSSQTSSCRVYDRFPSSLNPATGGSQLSPILIPDNNNIVNFEMADRIFQGSDFVNARDRLSCEDGATIDLLQLSSQLQRVEHQRQSLQVKQENDSSCTLRIT 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60485g00009 528 SUPERFAMILY SBT domain 160 239 IPR036893 GO:0003677|GO:0005634
Stsc60485g00009 528 Gene3D - 153 223 IPR036893 GO:0003677|GO:0005634
Stsc60485g00009 528 MobiDBLite consensus disorder prediction 82 105 - -
Stsc60485g00009 528 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 82 514 IPR044817 GO:0003677
Stsc60485g00009 528 FunFam Squamosa promoter-binding-like protein 14 153 223 - -
Stsc60485g00009 528 ProSiteProfiles Zinc finger SBP-type profile. 159 236 IPR004333 GO:0003677
Stsc60485g00009 528 Coils Coil 496 516 - -
Stsc60485g00009 528 Pfam SBP domain 162 235 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60485g00009 Stsc-Chr60485 57122 60284 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60485g00009 110 250 SBP-box Gene Family AT1G69170 61.702 1.72e-48 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Stsc60485g00009 SBP 5e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60485g00009 - - adu:107468861 848.966