Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60485g00006 ATGGGAAGGGGTAAGGTTGAGTTGAAGAGGATAGAAAACAAGATCAATAGGCAAGTTACATTTGCAAAGAGGAGAAATGGTTTGCTCAAGAAGGCTTATGAGCTTTCAGTTCTTTGCGATGCCGAAGTTGCCCTCATCATCTTCTCTAACCGCGGCAAACTCTACGAGTTTAGCAGCACTTCAAGCATGATGAGAACTTTGGAGAAGTATCACAAGTATAGTTACAGTGCACTCGAAGCTGGCCGACCAATCAGTGACACACAGACAAATTACCAGGATTATGTGAGACTAAAAGCAAAGGTAGAAGTCCTCCAACGTTCCCAGAGGAACCTAATGGGGGAAGATCTTGCTCAAATGAATACAACTGAGTTGGACCAGCTTGAGAATCAACTTGAGGTAGCACTTAAGAACATTAGGTCAACTAAGACTCAGTTTATGCTTGACCAACTTGCTGATCTTCAGAATCGGGAGATGGCGCTTGTTGAAACAAACAATGTGTTAAGGAGTAAGTTAGAAGAAATGAATAATCACTCATCATTAGAGGTGGCTTTGGAAGATGTGGGGCCCACCATTCACTATAACCGCTTTCCTCATGCTCCTCCTCCATCGGATCAATCATTTTTTCAACCTGTTCTTGGAGTTAATTCCAACTTGCAAATTGGATACAATCAGAGCATTCATCATGATGTGAACGTTGGAGCTTCATCCTTAACCATGCAAGGATTCGTCTCTGGTTGGATGCTTTGA 747 0.4257 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFSSTSSMMRTLEKYHKYSYSALEAGRPISDTQTNYQDYVRLKAKVEVLQRSQRNLMGEDLAQMNTTELDQLENQLEVALKNIRSTKTQFMLDQLADLQNREMALVETNNVLRSKLEEMNNHSSLEVALEDVGPTIHYNRFPHAPPPSDQSFFQPVLGVNSNLQIGYNQSIHHDVNVGASSLTMQGFVSGWML 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60485g00006 248 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Stsc60485g00006 248 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Stsc60485g00006 248 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Stsc60485g00006 248 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Stsc60485g00006 248 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Stsc60485g00006 248 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Stsc60485g00006 248 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Stsc60485g00006 248 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 172 - -
Stsc60485g00006 248 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Stsc60485g00006 248 FunFam MADS-box transcription factor 1 13 87 - -
Stsc60485g00006 248 Gene3D - 13 81 IPR036879 GO:0003677|GO:0046983
Stsc60485g00006 248 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Stsc60485g00006 248 Pfam K-box region 86 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Stsc60485g00006 248 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677|GO:0046983
Stsc60485g00006 248 Coils Coil 117 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60485g00006 Stsc-Chr60485 37976 43146 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60485g00006 1 248 MADS-box Gene Family AT5G15800 51.515 2.52e-82 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Stsc60485g00006 K-box 8.9e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60485g00006 K09264 - gmx:100804810 364.385