Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60484g00018 ATGCCTTACCTTGTCCGCGACAATCTCTTCATCGGGAACATCAGCGACGCCGCCGAAATCCTCCAGAACGGTGGAGCTGCCGCTGCTGCCGGAGGTGGAGACTTCACTCACATCCTCTCCGTCCTCAGCTCCGCCTCCATTTCCTTCTTCTCCGAATGGCGCCCTTCAATCTCCATCCCCGTAATAGAGATCAGCAAGGTCTACGTCTCCGGCGCCGGCAGCGGTGACTCCGGCAAGTGTGCCCTGCCGCCGGAGAAGCTCCTTTACTCGCTCGAGTACGCCGGACGTGACCTCAAGCTGGTGAGGATGGCGGTGCCTCTGAAGGACACAGAGAACGAGGACTTGCTTGACTACCTCGAAGTTTGCATCGACTTCATTGATCGTAGCAGGAAGGAAGGTTCCGTTTTAGTTCACTGCTTCGCCGGAGTTTCTAGAAGTGCGGCGGTGATTACAGCGTATTTGATGAGAATGGAAAATCTCTCCCTCGAAGATGCCCTTGAATCATTACGGAAGAGCTATGAATTTGTTTGCCCCAATGATGGCTTTCTTGAGCAGTTGAGAATGTTCGAGGAGATGGGCTTCAAGGTTGATCACTCCAGTCCTATATATAAGCGCTTTCGTCTGAAAATACTTGGTGATAATCATTTCTCGGGGTCTAGAATAGACAGTTCTAAACTGGGTGCAGACCCTGGCATGCCTGTACAAATTTCTTCAGATGTTGAAGGAGCTACTAAAGTAGAAAATAATAGGAGTCCTACATATCGCTGTAAGAAGTGCCGGCGAATTGTCGCATTGCAAGAAAATGTTTTAGCTCATGTTCCTGGTGAGGGTGAGACGTCCTTTGAGTGGCATAAGCGGAGAAGTGGCAATCCTTTCAACAAGTCTAATGAATCCTGTTCGTCCATATTTATTGAGCCTCTCCGATGGATGANNNNNNNNNNACTACAATACTATAGTGTCTCTATTTCTACAATGAGCTATGACTTTAGTGCAGGCGTGATGATGATAATAATTTTATGCTTAAATGGTCTTCTAAAACATTTTGAAATGTATCCAATTCTTTTCTTGCTTTGCTATCTTGGAGCATTTATGGGTGGTTCACTTAACCATCTCATTTGA 1119 0.4674 MPYLVRDNLFIGNISDAAEILQNGGAAAAAGGGDFTHILSVLSSASISFFSEWRPSISIPVIEISKVYVSGAGSGDSGKCALPPEKLLYSLEYAGRDLKLVRMAVPLKDTENEDLLDYLEVCIDFIDRSRKEGSVLVHCFAGVSRSAAVITAYLMRMENLSLEDALESLRKSYEFVCPNDGFLEQLRMFEEMGFKVDHSSPIYKRFRLKILGDNHFSGSRIDSSKLGADPGMPVQISSDVEGATKVENNRSPTYRCKKCRRIVALQENVLAHVPGEGETSFEWHKRRSGNPFNKSNESCSSIFIEPLRWMXXXXLQYYSVSISTMSYDFSAGVMMIIILCLNGLLKHFEMYPILFLLCYLGAFMGGSLNHLI 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60484g00018 372 ProSitePatterns Tyrosine specific protein phosphatases active site. 137 147 IPR016130 GO:0016311|GO:0016791
Stsc60484g00018 372 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 116 171 IPR000387 GO:0016311|GO:0016791
Stsc60484g00018 372 ProSiteProfiles Dual specificity protein phosphatase domain profile. 1 195 IPR020422 GO:0006470|GO:0008138
Stsc60484g00018 372 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE 12 FAMILY MEMBER 1 312 - -
Stsc60484g00018 372 SMART dsp_5 1 192 IPR020422 GO:0006470|GO:0008138
Stsc60484g00018 372 Pfam Dual specificity phosphatase, catalytic domain 102 191 IPR000340 GO:0008138|GO:0016311
Stsc60484g00018 372 Gene3D Protein tyrosine phosphatase superfamily 4 212 IPR029021 -
Stsc60484g00018 372 CDD DSP_DUSP12 4 197 - -
Stsc60484g00018 372 FunFam Dual specificity protein phosphatase 12-like 4 212 - -
Stsc60484g00018 372 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 98 193 IPR029021 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60484g00018 Stsc-Chr60484 105390 107920 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60484g00018 100 191 Protein tyrosine phosphatase (PTP) family AT3G06110 37.634 8.92e-16 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60484g00018 K14819 - gmx:100776877 471.855