LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc60484g00015	ATGGGACTCTGCCATGGAAAACCCATTGAAACCTCACAAAGAGGAGTAGGAGGAGGAAGAGGAGAAGACCCTTCATCATTCCTTGATGAAAAAGGTGTGGTTCTTTCACTGCCACCACCAACACCAAGTTCCCAAACCACAAAACCCTCATCAAAGTTCCCATTTTTCAGCCCAAGCCCTTTGCCAAGCTTCTTCAAGAACTCACCTGCACCAAGTTCAAATTCAAACCCTTCAAGTGTAAGCTCAACACCATTGAGGATCTTCAAGAGGCCATTCCCTCCTCCTTCTCCTGCAAAGCACATAAGAGCTTTGCTTGCAAGGAGGCATGGCTCTGTCAAGCCCAATGAGGCATCAATTCCTGAAGGGAGTGAGTGTGAGGTTGGATTGGACAAGAGCTTTGGATTCTCTAAGCAGTTTTTGGTTCACTATGAGCTTGGGGAAGAAGTGGGGCGTGGCCATTTTGGCTACACTTGCTCTGCCAAGGGTAAAAAAGGAACCTTCAAGGGCCATGAGGTTGCTGTCAAAGTCATTCCAAAAGCAAAGATGACAACTGCAATTGCTATTGAAGATGTGAGGAGAGAAGTAAAGATATTGCGAGCTTTAACCGGGCATAAAAACCTGGTACAATTCTATGAAGCCTATGAAGATGATGACAATGTTTATATAGTCATGGAGTTATGCAAAGGAGGTGAACTGCTAGATAAGATTCTTTCCAGAGGTGGAAAGTATTCAGAAGAGGATGCCAGGGTTGTCATGATTCAGATATTAAGTGTTGTAGCCTATTGTCATCTGCAGGGTGTTGTTCACCGTGATCTCAAGCCGGAGAATTTTCTTTTTGCTTCTAAGGAAGAAAGTTCCACACTTAAGGCGATTGATTTTGGACTCTCTGATTATGTGAAGCCAGATGAGAGGTTGAATGATATTGTTGGAAATCCAAGTTTTGATGAAGCTCCTTGGCCTTCTTTATCGGCTGATGCAATAGATTTTGTAAAGAGGCTGTTGAACAAGGATTATCGTAAAAGACTAACTGCAGCTCAGGCTCTCAGTCATCCATGGCTGGCGAATCATTGTGATGATTTGAAGATACCTATTGACATGATAATCCCCAAGCAAGTTAAAGCTTACATATGCTCATCATCTTTACGTAAATCAGCATTAGGGGCTCTTGCAAAGACATTAACATTAGTGCAGCTAGCTTATCTCAGAGAACAGTTTACTCAGTTAGGACCAAACAAAAATGGATCGATTTCTATGCAGAATTTCAAGACGGCTGTTTTAAGGTGTGCCACTGATGCCGCAAAGGATTCTCGAGTCTTAGATTACGTGAGCATGGTTAGTTCAATCCAATATCGGAAACTAGATTTCGAGGAATTTTGTGCTGCTGCTATAAGTGTGCATCAACTAGAGGGAATGGAGACCTGGGAGCACCATGCAAGGCGTGCCTATGAGCTGTTTGAAAAGGATGGAAATAGGCCGATCATGATTGAAGAGCTAGCTTCGGAACTTGGGCTTAGTCCATCAGTACCTGTCCATGTTGTACTCCAAGATTGGATAAGACACTCGGACGGGAAGCTTAGTTTCCTGGGGTTTGTCAGGCTTCTGCATGGAGCTTCTTCTCGCACGTTTCACAAGGCTTGA	1638	0.4377	MGLCHGKPIETSQRGVGGGRGEDPSSFLDEKGVVLSLPPPTPSSQTTKPSSKFPFFSPSPLPSFFKNSPAPSSNSNPSSVSSTPLRIFKRPFPPPSPAKHIRALLARRHGSVKPNEASIPEGSECEVGLDKSFGFSKQFLVHYELGEEVGRGHFGYTCSAKGKKGTFKGHEVAVKVIPKAKMTTAIAIEDVRREVKILRALTGHKNLVQFYEAYEDDDNVYIVMELCKGGELLDKILSRGGKYSEEDARVVMIQILSVVAYCHLQGVVHRDLKPENFLFASKEESSTLKAIDFGLSDYVKPDERLNDIVGNPSFDEAPWPSLSADAIDFVKRLLNKDYRKRLTAAQALSHPWLANHCDDLKIPIDMIIPKQVKAYICSSSLRKSALGALAKTLTLVQLAYLREQFTQLGPNKNGSISMQNFKTAVLRCATDAAKDSRVLDYVSMVSSIQYRKLDFEEFCAAAISVHQLEGMETWEHHARRAYELFEKDGNRPIMIEELASELGLSPSVPVHVVLQDWIRHSDGKLSFLGFVRLLHGASSRTFHKA	545

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc60484g00015	545	Gene3D	-	373	463	-	-
	Stsc60484g00015	545	FunFam	CDPK-related kinase 3	135	307	-	-
	Stsc60484g00015	545	SMART	serkin_6	143	353	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc60484g00015	545	SUPERFAMILY	Protein kinase-like (PK-like)	140	386	IPR011009	-
	Stsc60484g00015	545	PANTHER	SERINE/THREONINE-PROTEIN KINASE	310	521	-	-
	Stsc60484g00015	545	SUPERFAMILY	EF-hand	383	535	IPR011992	-
	Stsc60484g00015	545	Pfam	Protein kinase domain	143	314	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc60484g00015	545	Gene3D	Transferase(Phosphotransferase) domain 1	135	313	-	-
	Stsc60484g00015	545	MobiDBLite	consensus disorder prediction	38	54	-	-
	Stsc60484g00015	545	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	267	279	IPR008271	GO:0004672\|GO:0006468
	Stsc60484g00015	545	ProSiteProfiles	Protein kinase domain profile.	143	416	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc60484g00015	545	Gene3D	Transferase(Phosphotransferase) domain 1	314	372	-	-
	Stsc60484g00015	545	FunFam	CDPK-related kinase 1	136	231	-	-
	Stsc60484g00015	545	MobiDBLite	consensus disorder prediction	61	85	-	-
	Stsc60484g00015	545	FunFam	CDPK-related kinase 1	391	463	-	-
	Stsc60484g00015	545	MobiDBLite	consensus disorder prediction	1	95	-	-
	Stsc60484g00015	545	Gene3D	-	379	533	-	-
	Stsc60484g00015	545	ProSitePatterns	Protein kinases ATP-binding region signature.	149	175	IPR017441	GO:0005524

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc60484g00015	Stsc-Chr60484	94089	98158	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc60484g00015	41	541	EF-hand Containing Proteins	AT3G50530	62.415	0.0	715

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CAMK_CDPK	Stsc60484g00015		Pkinase	2.1e-41	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc60484g00015	K13412		-	gmx:100796678	845.114