Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60484g00011 ATGGATCACCACCATAACAACTCTGACCTCTTCCAACTCCTTGCCACCTCCGGTGCCGCTGCTTATTACCCGCCTGCAGCTATGTTCATGATGGATCATCATCATCAGCTATCATCCCCTGATGATAATGATAACTTGAGCGCCATAGAGATCATACAACCCTCTCATCATCATCATCAACAACAACAAGATAGAGCACTCGCCGCCCTCAGAAACCACAAAGAAGCTGAGAAGAGACGCAGGGAGAGAATCAATTCCCACCTCGCTCGCCTCCGCACTCTTCTACCTTGCAACTCCAAGACAGATAAAGCATCGCTTCTTGCAAAGGTAGTGCAGAGAGTGAAAGAGCTAAAACAGCAAACATCACAAATCATCAACGAATTCGAAACCCTACCCTCCGAGACAGACGAGATCACCGTCCTCGCCGACGCCGCCGCCCACGGAGGCCTCATATTCAAGGCCTCCCTCTGCTGCGAGGACCGCTCCGACCTCATCCCAGATCTCATAGAGATCCTCAAGTCTCTGCACCTCAAGACGCTGAGGGCAGAAATGGCAACCCTAGGCGGAAGAACTCGCAACGTTCTGGTGGTTGCCGCCGATAAAGAACACAACAGCATAGAGTCCATTCATTTTCTTCAGAACTCCTTGAAATCATTGCTTGAACGCTCTGGCGGTTCCTCTGATAGGTCCAAACGACGCCGTGCCATGGATCGAACATTCACACCTACTTCTTCATGA 738 0.5068 MDHHHNNSDLFQLLATSGAAAYYPPAAMFMMDHHHQLSSPDDNDNLSAIEIIQPSHHHHQQQQDRALAALRNHKEAEKRRRERINSHLARLRTLLPCNSKTDKASLLAKVVQRVKELKQQTSQIINEFETLPSETDEITVLADAAAHGGLIFKASLCCEDRSDLIPDLIEILKSLHLKTLRAEMATLGGRTRNVLVVAADKEHNSIESIHFLQNSLKSLLERSGGSSDRSKRRRAMDRTFTPTSS 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60484g00011 245 Coils Coil 107 127 - -
Stsc60484g00011 245 PANTHER TRANSCRIPTION FACTOR BHLH30 45 237 IPR045847 GO:0003700|GO:0006355
Stsc60484g00011 245 Pfam Helix-loop-helix DNA-binding domain 72 117 IPR011598 GO:0046983
Stsc60484g00011 245 MobiDBLite consensus disorder prediction 221 245 - -
Stsc60484g00011 245 CDD bHLH_AtAIG1_like 64 143 - -
Stsc60484g00011 245 MobiDBLite consensus disorder prediction 224 238 - -
Stsc60484g00011 245 Coils Coil 59 79 - -
Stsc60484g00011 245 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 72 141 IPR036638 GO:0046983
Stsc60484g00011 245 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 68 117 IPR011598 GO:0046983
Stsc60484g00011 245 FunFam transcription factor bHLH30 63 126 - -
Stsc60484g00011 245 SMART finulus 74 123 IPR011598 GO:0046983
Stsc60484g00011 245 Gene3D - 62 128 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60484g00011 Stsc-Chr60484 71962 73226 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60484g00011 63 226 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G41130 74.850 2.06e-76 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc60484g00011 HLH 2.7e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60484g00011 - - gmx:100794930 277.715