Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60484g00007 ATGATTGCTTCATTTGTTACAATAATAACTGTTGTGAAAACAGTACTACTTGTGAGTGTGGTGAAGTCATATCCAGAAGCTGATAAGATAAGCAGTTTGCCAGGGCAGCCACGTGTCACATTCCAGCAATATGCTGGATACATCACTGTGGATGACCATCAAGATAGAGCTTTGTTTTATTACTTTGCTGAGGCTCAATCAAACCCTGCTTCCAAACCACTCGTTCTTTGGCTGAATGGAGGGCCCGGTTGTTCATCGGTTGGAGTTGGAGCTTTTGCTGAAAATGGTCCTTTCAGACCTGAGGCAAATATGCTATATTTGGAATCACCAGCTGGAGTTGGTTTCTCCTACTCTAGCAATAAATCTTTCTATGACTTGGTTACAGATGAGATAACAGCAAGGGATAATGTTGTATTCTTAGAGCGGTGGTTTGCTAAATTTCCCGAGTACACAAAAAACGACTTTTTTATTACTGGGGAGAGCTATGCAGGTCACTATATTCCACAACTTGCATCTCTTATTATTCAATCCAACGCCACCTTCAATGCTAATCTTAAGGGCATAGCGTTAGGGAATCCTCTACTGGATTTTGATGTTGACCTGAACTCGGAAGCGGAATATTTATGGTCTCATGGTCTAATATCTGATTCAACATTCGAACTGTATAATACAGTATGCAACTCTTCTCAGATTATGAGAGAAACTATAGATGGAAAGCTTAGTGCTGATTGTGCAAGAGTTAATAATGTATCTTCCACTGAGATATCCAATTATGTTGATCAATATGATGTCACTCTTGATGTTTGTTTGTCACCGGCCAAACAACAAGTTTATATGCTCATGAATCAAATGCATGCGACACAAAATGTAGATGTTTGTGTAGGAGATAAATTGGTGGTATACTTAAATAGGGAAGATGTGCAACAAGCACTACATGCTAAACTTGTTGGAGTCCCCAAATGGTCAACTTGCAGCAAGGTTCTAAATTATGACCTTCATAATCTAGAAATACCAACACTTCCTCTTCTAGCTACATTTGTTGAGTTAGGCATTCGGGTTCTCGTATACAGTGAAGACCAGGATTCAGTGATCCCTTTAATCGGATCTAGATTTCTGGTGGATGGATTAGCCAGAGATATTAGACTCAATACGACAGTGCCCTATAGAGTCTGGTTTGAGGGAAAACAGGTGGCGGGATGGACACAAGAATATGGAAACATATTATCATATGCGACAGTCAGGGGAGCAGCTCACGAAGTCCCATTCTCTCAACCTGCAAGATCTTTGGTGCTATTTCAAGCATTTCTTCAAGGATACCCACTTCCCAGTTCCCAATAA 1338 0.4043 MIASFVTIITVVKTVLLVSVVKSYPEADKISSLPGQPRVTFQQYAGYITVDDHQDRALFYYFAEAQSNPASKPLVLWLNGGPGCSSVGVGAFAENGPFRPEANMLYLESPAGVGFSYSSNKSFYDLVTDEITARDNVVFLERWFAKFPEYTKNDFFITGESYAGHYIPQLASLIIQSNATFNANLKGIALGNPLLDFDVDLNSEAEYLWSHGLISDSTFELYNTVCNSSQIMRETIDGKLSADCARVNNVSSTEISNYVDQYDVTLDVCLSPAKQQVYMLMNQMHATQNVDVCVGDKLVVYLNREDVQQALHAKLVGVPKWSTCSKVLNYDLHNLEIPTLPLLATFVELGIRVLVYSEDQDSVIPLIGSRFLVDGLARDIRLNTTVPYRVWFEGKQVAGWTQEYGNILSYATVRGAAHEVPFSQPARSLVLFQAFLQGYPLPSSQ 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60484g00007 445 FunFam Carboxypeptidase 23 442 - -
Stsc60484g00007 445 FunFam Carboxypeptidase 339 438 - -
Stsc60484g00007 445 Pfam Serine carboxypeptidase 35 438 IPR001563 GO:0004185|GO:0006508
Stsc60484g00007 445 ProSitePatterns Serine carboxypeptidases, serine active site. 157 164 IPR018202 GO:0004185
Stsc60484g00007 445 PRINTS Carboxypeptidase C serine protease (S10) family signature 107 117 IPR001563 GO:0004185|GO:0006508
Stsc60484g00007 445 PRINTS Carboxypeptidase C serine protease (S10) family signature 408 421 IPR001563 GO:0004185|GO:0006508
Stsc60484g00007 445 PRINTS Carboxypeptidase C serine protease (S10) family signature 143 168 IPR001563 GO:0004185|GO:0006508
Stsc60484g00007 445 SUPERFAMILY alpha/beta-Hydrolases 31 442 IPR029058 -
Stsc60484g00007 445 Gene3D alpha/beta hydrolase 21 441 IPR029058 -
Stsc60484g00007 445 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 29 425 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60484g00007 Stsc-Chr60484 39765 42046 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60484g00007 301 441 Calmodulin-binding Proteins AT2G22960 29.787 1.97e-17 78.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60484g00007 K16297 - gmx:100800430 624.009