Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60484g00005 ATGGGCCTCGGAAAGACTCTCACTTTGCTCTCTCTTATTGCGCTTGATAAGGGTGCCGGCGATGGTACTAAGAAGAAGGGAAAGAAGAAAAGAAAGATTGAGAGTGGGAGTGGGGAGAGCAGTGCAACCCTTGTTGTGTGCCCTCCCTCTGTGTTTTCGACATGGATTTTGCAATTGGAGGAACACACTGTGCCTGGCTCACTGAGGACTTGCATGTACTATGGTGACAAGAGGGCTAAGAATGCTGAGGAGCTGATGGATTATGATTTGGTGCTCACTACTTACTCTACACTCTCAATGGAGGAGGATGTGGCCGACTCGCCGGTGAAGAAGGTGGTGTGGAGGAGGATCATATTGGATGAGGCTCACATTATCAAGAATTCGAATGCCCGGCAGAGCAAGATGGTTATTAGCCTGAATGCCAAGAGCAGGTGGGCTGTCACCGGCACACCCATTCAGAATGGCTCCTTGGACTTGTTTTCGCTCATGGCTTTCTTGCATTTTGAGCCCTTCTCCATAAAGAGCTATTGGCGCAGCCTCGTGCAACGGCCTCTTAATCAGGGTCTTCAGAGCGGCCTCTCACGCCTGCAGGTTTTGATGGCGGCGATTTCCTTAAGAAGAACAAAAGACAATGGATTGTTAGGGCTGCCACCAAAAACCATAGAGACTCAATATGTTGAACTTTATTCAGAAGAACGTGAACTGTATGATAGGGTGAAAGAGGAAGCGACACTTTTAATGAGGAGTTTTAACAATGGAACCAACAATTTTCCAGTTGTGCTAAGTATGCTTTTACGTCTTCGCCAAATCTGTACTGATTTAGCATTATGCCCGAGTGATCTCGCAATGACTTTCCGTTCAACTAATCTTGAAGATGTTTCCAATAACCCGCAGTTGTTGCAAAAGTTAGTTGAGATGCTGCAAGATGGTGAAGATTTTGAGTGCCCGATTTGCATTTCTCCTTCAGCAGACATGGTTATCACCCGCTGTGCTCACATCTTCTGCCGTGTGTGTATTCTGAAATCTCTACAATCCAGCAAATCCCGTTGTCCTCTTTGCCGTCAAGCCCTATCTGAATCTGACTTGTTCTCAGCCCCAATTGAGTCTTCTAAAGCTGATAGTACTGCTTCATCCTCATCATCATCAGATAAAAAGTTATCTTCCAAAGCATCTGCTTTGATAAATTTTCTCAAGGAATCAAGAGAGCAGAATCCAGCAGCAAAGTCAGTAGTATTTTCACAATTTCGCAAGTTGTTAGTGTTATTGGAAGCACCTTTGAAGGAGGCTGGTTTCAACACTTTGCGCATTGATGGCTCGATGACGGCTAAACAGAGGGCTAATGTTATTGATCAATTTCAAGGCACTAAAGGAGATGGACCAACGGTTCTGCTTGCAAGCCTTAGGGCTTCAGGTGCAGGTATAAATCTGACAGCTGCCACCACTGTGTATTTCATGGAGCCATGGTGGAATCCAGCTGTGGAGGAACAGGCAATGGATCGCATCCATCGTATTGGACAGAAAGAGGCTGTGAAGATTGTTAGATTGGTTGCTCAGGACAGCATAGAGGAAAAGATATTGATGTTGCAAGAGAAGAAGAAAGAACTAGCAAGGGAAACATTTAGAAAGAGGGGAAGTGATGCTGGTGGCATGAGCTATAAGATATAA 1665 0.4529 MGLGKTLTLLSLIALDKGAGDGTKKKGKKKRKIESGSGESSATLVVCPPSVFSTWILQLEEHTVPGSLRTCMYYGDKRAKNAEELMDYDLVLTTYSTLSMEEDVADSPVKKVVWRRIILDEAHIIKNSNARQSKMVISLNAKSRWAVTGTPIQNGSLDLFSLMAFLHFEPFSIKSYWRSLVQRPLNQGLQSGLSRLQVLMAAISLRRTKDNGLLGLPPKTIETQYVELYSEERELYDRVKEEATLLMRSFNNGTNNFPVVLSMLLRLRQICTDLALCPSDLAMTFRSTNLEDVSNNPQLLQKLVEMLQDGEDFECPICISPSADMVITRCAHIFCRVCILKSLQSSKSRCPLCRQALSESDLFSAPIESSKADSTASSSSSSDKKLSSKASALINFLKESREQNPAAKSVVFSQFRKLLVLLEAPLKEAGFNTLRIDGSMTAKQRANVIDQFQGTKGDGPTVLLASLRASGAGINLTAATTVYFMEPWWNPAVEEQAMDRIHRIGQKEAVKIVRLVAQDSIEEKILMLQEKKKELARETFRKRGSDAGGMSYKI 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60484g00005 554 SMART helicmild6 420 505 IPR001650 -
Stsc60484g00005 554 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 205 IPR027417 -
Stsc60484g00005 554 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 392 554 IPR001650 -
Stsc60484g00005 554 CDD SF2_C_SNF 392 516 - -
Stsc60484g00005 554 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 208 541 IPR027417 -
Stsc60484g00005 554 SMART ultradead3 1 183 IPR014001 -
Stsc60484g00005 554 Coils Coil 518 538 - -
Stsc60484g00005 554 Gene3D - 1 208 IPR038718 -
Stsc60484g00005 554 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 169 IPR014001 -
Stsc60484g00005 554 SMART ring_2 315 353 IPR001841 -
Stsc60484g00005 554 Pfam Zinc finger, C3HC4 type (RING finger) 314 353 - -
Stsc60484g00005 554 ProSitePatterns Zinc finger RING-type signature. 330 339 IPR017907 -
Stsc60484g00005 554 CDD RING-HC_HLTF 310 362 - -
Stsc60484g00005 554 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 1 540 - -
Stsc60484g00005 554 ProSiteProfiles Zinc finger RING-type profile. 315 354 IPR001841 -
Stsc60484g00005 554 SUPERFAMILY RING/U-box 311 363 - -
Stsc60484g00005 554 Pfam SNF2-related domain 1 274 IPR000330 GO:0005524|GO:0140658
Stsc60484g00005 554 Gene3D - 363 548 IPR027417 -
Stsc60484g00005 554 Pfam Helicase conserved C-terminal domain 389 505 IPR001650 -
Stsc60484g00005 554 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 296 362 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60484g00005 Stsc-Chr60484 28102 31077 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60484g00005 1 543 RAD5 or RAD16-like Gene Family AT5G05130 58.579 0.0 676
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Stsc60484g00005 SNF2_N 5.4e-63 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60484g00005 K15711 - rvl:131322224 678.322