Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60484g00004 ATGGTGGTGCAACGCTGGTTGTGTTCCCTTTCTGGATGCTGTCGACATGGCCTAAGCAATTGGCCTGGTTCACTCACCTATTACATGTACTATGGTTTTGACAGGACCAAGAACGCGGAGGATCTGATGAGTTATGATTTGGTCCTCACTAAGGTTGACTCGCCGGTGAAGAAGGTGGTGTGGAGGAGGCTCACACTATCAAGAATCCGAGGAGTGTCGTGCAGAGCAAGATGGTTACGAGCCTCAATGCCAGGAGCAGATGTTTCCAATAAGCCAGATTTGTTGCAAAAGTTAGTAGAGAAGCTTCAAGATGAAGATTATGACTGCCCAATTTGCCTTCATCCTAAACAAGACCTGGTTATTACCAAGTGTGCTCACGTCTTCTCCAACCTCAGAAGAACCAACCCGGCCTTTGTTCTTATTGCCGTGGATCCCTACGTAAATCTGACTTGTTCTCCCCCATGGCCCACGCTCCTGCTGTTCATTTTACAAGGTTATCTTCCGAAATTCCAACAGGAGTATACATACTAG 531 0.4708 MVVQRWLCSLSGCCRHGLSNWPGSLTYYMYYGFDRTKNAEDLMSYDLVLTKVDSPVKKVVWRRLTLSRIRGVSCRARWLRASMPGADVSNKPDLLQKLVEKLQDEDYDCPICLHPKQDLVITKCAHVFSNLRRTNPAFVLIAVDPYVNLTCSPPWPTLLLFILQGYLPKFQQEYTY 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60484g00004 176 SUPERFAMILY RING/U-box 97 128 - -
Stsc60484g00004 176 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 90 131 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60484g00004 Stsc-Chr60484 26603 27295 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60484g00004 2 66 RAD5 or RAD16-like Gene Family AT5G05130 38.667 9.35e-08 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60484g00004 K15711 - thj:104827449 70.4774