Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60484g00003 ATGAAGTCACTGGATCGCTGGAGGAGTTACTTCAGGTCTTGTTCAGCTTCCTCCGATATATTTGAGATAATTGACCATGCCATCATGGTGGCCGCTTCTGATTGCCCCAAGGAGTTTAGCCTCAGGAGGGACCGTATAGCCGTGATGCTCTTCTCTTGCAAGATGACAAGATGCACAGGTTGTGACAAACTTGAACTTTCTGTCCCCGTGGATGCTGCTGATGGCGGTGGTGGCGATGATAATGGTGCCTTCAAGAGTGATAACGGGGCAAGCAAAGAGAGCAAGGTGAATAGCTCGAGGGATGATATTGATGACATGGATGTCAACAAGGTCCTCAGCAATTATAGCTTTGGTGAAGCTGAGGCATTGACTGATGAAATTGAAGAGCAGTCTCAGTTTTTTGACGAGGTCTTGAGGATCAGAGGCATTCTCCATAACCATCAAGAAGAGTCAGATGCAGTGCTGTTTGAGTCATTGAGGAGACTGCAACTGATGGAACTCACTGTTGATTGTCTCAAGGCAACTGAGATTGGAAAGGCTGTTACTCCTCTTAGAAAGCATGCTTCAAAGGATATCCGTCAACTCGCACGAAAGCTTATCGATGAATGGAAAGGAATGGTAGATGAGTGGGTCAATGCTACTGCTACCATTGCTATTGAAGGATCAGAAGGCACTCCAGATTCAGTAAATCCATCAGTTGTTGATGAAGAGGAAGGACTTCCATCACCTCCTTTGGATGATGCAGCTTTCCTTTTATCTGCAACCGGTTCAATAGAACTCTCACAGTTCTTTGACGGCATGGATGATGATGGAAATCCTCGACAAAGTGGGCAATTCAAGAACAGAGAAAATGGCAGAAAGCCATCAATGGACAACCAAAATGTAGAAAAGAGGAAATCACAAGCTTCAAATGAGACGAACAACGGAGTTGCCAAGAGAACTGAGCCCGCTGTGAGGCCAAGTAGAGCAGCAACCGGTGATTCTGGTCCTGGCAGACCACCAAAGTCAAGCATGCAGCGAAAAAGCAATGCCGAGCCAAAGCCAAAGCCGGAGCAAAAAGTAAATAACGGTACAGTCACAAGGAAGCCTCCGGTTGAGCAGCAAGATAAATCAAAGTGCTTGGATGATTCTGCGAAGCTAGAAGTCGCTAAGAGGAAACTTCAGGAGCGATATCAACAAGCCGAAAATGGTTTGTCATTTCTCTTCTGA 1209 0.4599 MKSLDRWRSYFRSCSASSDIFEIIDHAIMVAASDCPKEFSLRRDRIAVMLFSCKMTRCTGCDKLELSVPVDAADGGGGDDNGAFKSDNGASKESKVNSSRDDIDDMDVNKVLSNYSFGEAEALTDEIEEQSQFFDEVLRIRGILHNHQEESDAVLFESLRRLQLMELTVDCLKATEIGKAVTPLRKHASKDIRQLARKLIDEWKGMVDEWVNATATIAIEGSEGTPDSVNPSVVDEEEGLPSPPLDDAAFLLSATGSIELSQFFDGMDDDGNPRQSGQFKNRENGRKPSMDNQNVEKRKSQASNETNNGVAKRTEPAVRPSRAATGDSGPGRPPKSSMQRKSNAEPKPKPEQKVNNGTVTRKPPVEQQDKSKCLDDSAKLEVAKRKLQERYQQAENGLSFLF 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60484g00003 402 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 126 218 IPR035441 -
Stsc60484g00003 402 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26A-RELATED 3 396 IPR044805 -
Stsc60484g00003 402 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 132 214 IPR035441 -
Stsc60484g00003 402 SMART TFS2_5 134 209 IPR003617 GO:0005634
Stsc60484g00003 402 MobiDBLite consensus disorder prediction 79 100 - -
Stsc60484g00003 402 MobiDBLite consensus disorder prediction 263 377 - -
Stsc60484g00003 402 Pfam TFIIS helical bundle-like domain 159 207 IPR017923 -
Stsc60484g00003 402 Coils Coil 377 397 - -
Stsc60484g00003 402 MobiDBLite consensus disorder prediction 280 294 - -
Stsc60484g00003 402 MobiDBLite consensus disorder prediction 219 247 - -
Stsc60484g00003 402 ProSiteProfiles TFIIS N-terminal domain profile. 135 210 IPR017923 -
Stsc60484g00003 402 MobiDBLite consensus disorder prediction 295 311 - -
Stsc60484g00003 402 CDD TFIIS_I 135 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60484g00003 Stsc-Chr60484 14088 17748 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Stsc60484g00003 Med26 5.4e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60484g00003 - - gmx:100775579 489.574