Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60484g00002 ATGAAGTCACTGGATCGCTGGAGGAGTTACTTCAGGTCTTGTTCAGCTTCCTCCGATATATTTGAGATAATTGACCATGCCATCATGGTGGCCGCTTCTGATTGCCCCAAGGAGTTTAGCCTCAGGAGGGACCGTATAGCCGTGATGCTCTTCTCTTGCAAGATGACAAGATGCACAGGTTGTGACAAACTTGAACTTTCTGTCCCCGTGGATGCTGCTGATGGCGGTGGTGGCGATGATAATGGTGCCTTCAAGAGTGATAACGGGGCAAGCAAAGAGAGCAAGGTGAATAGCTCGAGGGATGATATTGATGACATGGATGTCAACAAGGTCCTCAGCAATTATAGCTTTGGTGAAGCTGAGGCATTGACTGATGAAATTGAAGAGCAGTCTCAGTTTTTTGACGAGGTCTTGAGGATCAGAGGCATTCTCCATAACCATCAAGAAGAGTCAGATGCAGTGCTGTTTGAGTCATTGAGGAGACTGCAACTGATGGAACTCACTGTTGATTGTCTCAAGGCAACTGAGATTGGAAAGGCTGTTACTCCTCTTAGAAAGCATGCTTCAAAGGATATCCGTCAACTCGCACGAAAGCTTATCGATGAATGGAAAGGAATGGTAGATGAGTGGGTCAATGCTACTGCTACCATTGCTATTGAAGGATCAGAAGGCACTCCAGATTCAGTAAATCCATCAGTTGTTGATGAAGAGGAAGGACTTCCATCACCTCCTTTGGATGATGCAGCTTTCCTTTTATCTGCAACCGGTTCAATAGAACTCTCACAGTTCTTTGACGGCATGGATGATGATGGAAATCCTCGACAAAGTGGGCAATTCAAGAACAGAGAAAATGGCAGAAAGCCATCAATGGACAACCAAAATGTAGAAAAGAGGAAATCACAAGCTTCAAATGAGACGAACAACGGAGTTGCCAAGAGAACTGAGCCCGCTGTGAGGCCAAGTAGAGCAGCAACCGGTGATTCTGGTCCTGGCAGACCACCAAAGTCAAGCATGCAGCGAAAAAGCAATGCCGAGCCAAAGCCAAAGCCGGAGCAAAAAGTAAATAACGGTACAGTCACAAGGAAGCCTCCGGTTGAGCAGCAAGATAAATCAAAGTGCTTGGATGATTCTGCGAAGCTAGAAGTCGCTAAGAGGAAACTTCAGGAGCGATATCAACAAGCCGAAAATGCTAAGAGGCAACGAACCATACAAGTAATGGAATTGAATGATATCCCAAAGCAAGGAGTTGTCCATCGAAATCCGCTCAAATCCGGAAACCGCGGCGGCCGGCAGTGGGGCCACGGGCGAAGGTAG 1314 0.4688 MKSLDRWRSYFRSCSASSDIFEIIDHAIMVAASDCPKEFSLRRDRIAVMLFSCKMTRCTGCDKLELSVPVDAADGGGGDDNGAFKSDNGASKESKVNSSRDDIDDMDVNKVLSNYSFGEAEALTDEIEEQSQFFDEVLRIRGILHNHQEESDAVLFESLRRLQLMELTVDCLKATEIGKAVTPLRKHASKDIRQLARKLIDEWKGMVDEWVNATATIAIEGSEGTPDSVNPSVVDEEEGLPSPPLDDAAFLLSATGSIELSQFFDGMDDDGNPRQSGQFKNRENGRKPSMDNQNVEKRKSQASNETNNGVAKRTEPAVRPSRAATGDSGPGRPPKSSMQRKSNAEPKPKPEQKVNNGTVTRKPPVEQQDKSKCLDDSAKLEVAKRKLQERYQQAENAKRQRTIQVMELNDIPKQGVVHRNPLKSGNRGGRQWGHGRR 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60484g00002 437 Coils Coil 377 404 - -
Stsc60484g00002 437 SMART TFS2_5 134 209 IPR003617 GO:0005634
Stsc60484g00002 437 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26A-RELATED 3 421 IPR044805 -
Stsc60484g00002 437 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 126 218 IPR035441 -
Stsc60484g00002 437 MobiDBLite consensus disorder prediction 79 100 - -
Stsc60484g00002 437 MobiDBLite consensus disorder prediction 263 377 - -
Stsc60484g00002 437 MobiDBLite consensus disorder prediction 280 294 - -
Stsc60484g00002 437 MobiDBLite consensus disorder prediction 219 247 - -
Stsc60484g00002 437 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 132 214 IPR035441 -
Stsc60484g00002 437 ProSiteProfiles TFIIS N-terminal domain profile. 135 210 IPR017923 -
Stsc60484g00002 437 MobiDBLite consensus disorder prediction 295 311 - -
Stsc60484g00002 437 CDD TFIIS_I 135 208 - -
Stsc60484g00002 437 MobiDBLite consensus disorder prediction 412 437 - -
Stsc60484g00002 437 Pfam TFIIS helical bundle-like domain 159 207 IPR017923 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60484g00002 Stsc-Chr60484 14088 17748 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Stsc60484g00002 Med26 6.1e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60484g00002 - - gmx:100775579 549.28