Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60483g00033 ATGAGAAGAAAAGGGAGAGAGATTCTTAACCTATGTATCTCTCTACACTCCCCATTGAAGCCTGAACCATTTGCATCTTCTTTTCATGGGGCTTCTAGAACCTTCTCAACATATTCCGCTTCTTCTTTTTCTTCTTCTTCTTCCTCCTCCAGCACCGTAACCCCTTCCCCTTGTGTTGAAGATGAAAAGGCTTCGGCACCGTCCACGACGCAGAGGGAATCAATGATTTTGGAACAGTTCAGACAAAGGAAGCTGAAAGGATCTTCATCAAGTTCTTCTCGTGATGCAGATGCTGAGAAGAAAGAGGGTGAGTCCACTATGGTGGTTTCCAACTTTAGGGAGCTGGGTGTGGCTGAGGAGTTTGCTGAGATTTTGGAAAATATTGGTGATGGTGTTCCGAGTGAGATACAGTGTCTATTTATTCCAGCTGTTTTTGGAGGGAAGAGCTTGTTGTTGAGTTCACTGCCTGAAAATGACAGAACTTTGGCTTTCTTGTTGCCCCTTATTCAGCTGCTGCGACATGGTAAGGTTGGTTCGAATTCAAAGCATCCCAGAGCCATTGTGATCTGTGCTACTGAGGAGAAAGCCAATGAGTGCTTTAGTGCTGCAAAATACATAATGGAGATTGCAGAAGCGAAGTTGGCGAAGAGTTCTTCCCCAGATAATGAGCACTCAGATGTCTCAATTGGTCTTCTAATCGGAACTCCTTCGGAGATTATTGAGTATATTGAAGAGGGAAGTGTTGTTCCTGCTGAAATAAGATATATGGTTTTGGATGATGTAGATTTCATGCTTGGTAGTGGCCTTGGTTCTAAAATCCACGAGATTCTCAAACCGTTGCAAGATCACAGAAGATTGCAAACCGTTCTAGTTACATCACCAATCACTGAGGTTTTGGGTGATGAATCCCCCATTGTGAAGCACCTTGAGCGTGATCATGCTGGAAATATTTCTGCTATGTCTTTGGAAATGGATCAAAGAGAAGTGTTCCAATATACAGAGTCCCTGGATGCTCTTAGGAAAAAAGTGGCAGAGGCCATGGACACCCTTGTGTAA 1056 0.4375 MRRKGREILNLCISLHSPLKPEPFASSFHGASRTFSTYSASSFSSSSSSSSTVTPSPCVEDEKASAPSTTQRESMILEQFRQRKLKGSSSSSSRDADAEKKEGESTMVVSNFRELGVAEEFAEILENIGDGVPSEIQCLFIPAVFGGKSLLLSSLPENDRTLAFLLPLIQLLRHGKVGSNSKHPRAIVICATEEKANECFSAAKYIMEIAEAKLAKSSSPDNEHSDVSIGLLIGTPSEIIEYIEEGSVVPAEIRYMVLDDVDFMLGSGLGSKIHEILKPLQDHRRLQTVLVTSPITEVLGDESPIVKHLERDHAGNISAMSLEMDQREVFQYTESLDALRKKVAEAMDTLV 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60483g00033 351 SMART poly_2 293 351 IPR002004 GO:0003723
Stsc60483g00033 351 Gene3D - 301 351 - -
Stsc60483g00033 351 Gene3D - 57 300 IPR027417 -
Stsc60483g00033 351 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 141 313 IPR014001 -
Stsc60483g00033 351 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 245 351 IPR002004 GO:0003723
Stsc60483g00033 351 SUPERFAMILY PABC (PABP) domain 298 350 IPR036053 GO:0003723
Stsc60483g00033 351 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 106 297 IPR027417 -
Stsc60483g00033 351 MobiDBLite consensus disorder prediction 88 105 - -
Stsc60483g00033 351 MobiDBLite consensus disorder prediction 38 76 - -
Stsc60483g00033 351 Pfam Poly-adenylate binding protein, unique domain 304 350 IPR002004 GO:0003723
Stsc60483g00033 351 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 52 297 - -
Stsc60483g00033 351 Pfam DEAD/DEAH box helicase 135 292 IPR011545 GO:0003676|GO:0005524
Stsc60483g00033 351 MobiDBLite consensus disorder prediction 38 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60483g00033 Stsc-Chr60483 132670 134730 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60483g00033 304 350 Eukaryotic Initiation Factors Gene Family AT4G34110 51.064 4.09e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60483g00033 - - gmx:100800575 381.333