Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60482g00007 ATGGATAAGAAAAAGGTTGCGGTTCCTCTTGTTTGCCATGGTCACTCTCGCCCAGTGGTTGATCTCTTCTACAGTCCTGTAACTCCCGATGGATTCTTTCTCATCAGTGCAAGCAAGGATTCTAGTCCTATGCTCAGGAATGGAGAGACTGGGGATTGGATTGGAACATTTGAAGGGCACAAAGGTGCGGTGTGGAGTTGCTGCTTGGATACTAATGCGTTGCGTGCTGCAACTGCTTCTGCTGATTTCTCAACGAAAGTCTGGGATGCATTAACTGGAGATGAGTTGCATTCTTTTGAGCATAAACACATTGTTCGAGCATGTGCTTTTTCCGAGGATACACACCTTTTGCTCACTGGGGGAGTAGAGAAAATTCTCCGAATTTATGATTTGAATCGACCTGATGCACCACCCAGGGAAGTTGATAAATCTCCTGGTTCAGTGAGAACTGTTGCATGGCTTCATAGTGACCAGACAATATTGAGTTCTTGTACTGATATGGGTGGTGTCAGGCTATGGGATGTAAGAAGCGGTAAAATAGTTCAGACACTTGAAACCAAGTCGTCTGTTACAAGTGCAGAAGTGAGTCAGGATGGCCGTTATATTACAACTGCTGATGGTTCTAGTGTGAAATTCTGGGATGCTAATTACTATGGATTAGTAAAGAGCTATGACATGCCTTGTAATGTGGAATCTGCATCATTGGAGCCAAAATATGGGAACAAGTTTGCTGCTGGAGGAGAAGACATGTGGGTTCGTGTGTTTGATTTCCATACAGGCAATGAGATTGCATGCAACAAGGGCCACCACGGTCCTGTCCACTGTGTCCGTTTCTCTCCCGGAGGAGAATCATATGCCTCAGGATCCGAGGACGGAACCATCAGAATATGGCAGACAGGTCCATTGACTCAGGAAGAATCAGAGGCTTTAGCTGCAAATGGATCAATTGAGAAGGTGAAGGTAACTGCAGATGAGGTTTCACGCAAGATTGAGGGATTTCATATTGCAGATGAGGGTAAATCCAAAGAGAAGGAAGAGGCAGGGGAGGAATAA 1053 0.453 MDKKKVAVPLVCHGHSRPVVDLFYSPVTPDGFFLISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTNALRAATASADFSTKVWDALTGDELHSFEHKHIVRACAFSEDTHLLLTGGVEKILRIYDLNRPDAPPREVDKSPGSVRTVAWLHSDQTILSSCTDMGGVRLWDVRSGKIVQTLETKSSVTSAEVSQDGRYITTADGSSVKFWDANYYGLVKSYDMPCNVESASLEPKYGNKFAAGGEDMWVRVFDFHTGNEIACNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTGPLTQEESEALAANGSIEKVKVTADEVSRKIEGFHIADEGKSKEKEEAGEE 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60482g00007 350 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 266 298 - -
Stsc60482g00007 350 SUPERFAMILY WD40 repeat-like 4 301 IPR036322 GO:0005515
Stsc60482g00007 350 Gene3D - 9 325 IPR015943 GO:0005515
Stsc60482g00007 350 Pfam WD domain, G-beta repeat 54 89 IPR001680 GO:0005515
Stsc60482g00007 350 Pfam WD domain, G-beta repeat 179 214 IPR001680 GO:0005515
Stsc60482g00007 350 Pfam WD domain, G-beta repeat 265 297 IPR001680 GO:0005515
Stsc60482g00007 350 Pfam WD domain, G-beta repeat 94 130 IPR001680 GO:0005515
Stsc60482g00007 350 ProSiteProfiles Trp-Asp (WD) repeats profile. 57 98 IPR001680 GO:0005515
Stsc60482g00007 350 FunFam Serine-threonine kinase receptor-associated protein 8 322 - -
Stsc60482g00007 350 CDD WD40 14 298 - -
Stsc60482g00007 350 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT I 7 341 - -
Stsc60482g00007 350 ProSiteProfiles Trp-Asp (WD) repeats profile. 98 132 IPR001680 GO:0005515
Stsc60482g00007 350 ProSiteProfiles Trp-Asp (WD) repeats profile. 266 298 IPR001680 GO:0005515
Stsc60482g00007 350 SMART WD40_4 92 130 IPR001680 GO:0005515
Stsc60482g00007 350 SMART WD40_4 177 214 IPR001680 GO:0005515
Stsc60482g00007 350 SMART WD40_4 134 174 IPR001680 GO:0005515
Stsc60482g00007 350 SMART WD40_4 259 298 IPR001680 GO:0005515
Stsc60482g00007 350 SMART WD40_4 5 47 IPR001680 GO:0005515
Stsc60482g00007 350 SMART WD40_4 217 256 IPR001680 GO:0005515
Stsc60482g00007 350 SMART WD40_4 50 89 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60482g00007 Stsc-Chr60482 79662 83427 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60482g00007 9 296 Eukaryotic Initiation Factors Gene Family AT2G46290 28.221 8.91e-39 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60482g00007 K13137 - gmx:100818422 672.544