Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60482g00003 ATGAAGGATCCAAAGGAGGATCAAGAGAAATCTAGGAGGGTGGTTGTGCAGAAATCCATGGAGCTTAGAAGAAGGGGAAGCAGAAGGAGAAACCAATTCAGCAAAGGAGTTGATTCACAACTTGTGTCCAAGAATCTTGTGTTTGCTGCAAGGCCTGGCTATGGCCAACTTGGAACAAAGTGTGTCGTCAAAGCTAACCATTTCCTTGCAGATATTTCAGCATCTGACCTCAGCCATTACACTGTTAAGATAATACCTGAAGTGAGATGTCGAAAAACAAGCAAAGCTATAATAGCTGAGTTGGTGAGGGTTCACAAGAACACTGAGTTGGGTATGAGGCTTCCTGTGTATGATGGAGGAAGAAATCTTTACACTGCTGCCATGCTTCCTTTCACATACAAAGACTTCACCATACTCTTAACCCAAGATGATGACAGTAATGGTGGTGCTACTAGGGAAAGAGAGTTTAAGGTGGTAATCAAGTTTGCTGCTCGTGTTAGCATGCATCAATTACGTGTGCTTCTCAGTGGCAAACAAGTTGACACACCACAAGAAGCACTTACTGTTATTGACATTGTTCTCAGGGAGCTTGCTGCACAGAGTTACGTGTCCGTTGGGAGGTTTCTGTATTCTCCTGATTTTAGAAAACCACAGCAGCTTGGTGGTGGCTTAGAATCATGGCGTGGATTCTACCAAAGCATAAGGCCTACCCAGATGGGTTTATCACTCAATATTGACATGTCATCAATGGCGTTTATTGAGCCACTCCCTGTGATTGACTTTGTTGCTCAAATTTTGGGAAAAGATGTGCACTCAAAACCTTTGTCAGATGCAGATCGTGTCAAGATTAAGAAAGCATTAAGAGGTGTTAAAGTTGAAGTTACACACAGAGGGAGTTTCAGAAGGAAGTATAGGATATCAGGATTGACATCACAGCCAACAAGGGAGCTTAACTTCCCTCTTGATGAGAAAATGAACATGAAATCAGTGGCATGCAAGATAGTTGGAGGGCAGAGGTATACAAAAGGGCTGAATGAAAAGCAGATAACTTCTCTCTTGAAGGTCTCATGCCAGAGACCACGTGAACAAGAGACAGATATTCTTCAGACAATTCAAGAAAATGATTATGAATATAATCCGTATGCGAAAGAGTTTGGTATCAGTGTAGACAGCAAGCTTACATCGGTTGATGCTCGGGTTCTTCCTGCTCCATGGTTGAAATATCATGACACAGGAAGAGAGAAAGAATACTTGCCACAAGTTGGTCAGTGGAATATGATGAACAAGAAAGTAATAAATGGAAGCACTGTAAGATATTGGGCATGTATCAATTTCTCAAGAAGTGTCCAAGAAAGCACAGCTCGCGGATTTTGCCAACAGTTAGTTCAGATGTGCCAAATCTCAGGCATGGAATTTAGCCAGGATCCTGTGATTCCTGTGTATTCAGCAAAACCTGATCTAGTTAAGAAGGCTTTGAGGTATGTACATTCTGCTTCTCTAGACAAACTCGGTGGCAAGGAGCTTGAATTGCTTATTGCAATTCTTCCAGACAACAATGGCTCTCTATATGGTGATCTCAAAAGAATCTGTGAAACCGATCTCGGGTTGATTTCTCAGTGTTGTCTTACAAAGCATGTATTCAAGATTAATAGACAGTACTTGGCAAATGTTGCACTCAAAATCAATGTCAAGATGGGAGGAAGGAACACAGTGCTTTTGGATGCTTTAAGTTGGAGGATTCCACTGGTTAGTGACATTCCAACAATAATTTTTGGAGCTGATGTAACCCATCCAGAATCCGGAGAGGACTCTTGTCCTTCCATTGCTGCTGTTGTAGCCTCACAGGACTGGCCAGAAGTAACAAAGTATGCAGGATTGGTTTGCGCGCAGCCTCATCGGGAAGAACTCATACAAGATCTTTTCAAATGCTGGAAAGATCCTCATCATGGTGTGGTTTATGGTGGCATGATCAGAGAGCTCTTACTCTCTTTTAAGAAGGCAACTGGACAAAAACCATTGAGGATAATATTTTACAGGGATGGGGTAAGCGAAGGACAATTCTACCAAGTTTTGCTGTATGAGCTTGATGCCATCCGAAAGGCTTGTGCATCTTTGGAACCTAGTTATCAACCTCCAGTAACATTTGTTGTGGTTCAAAAACGCCATCACACTAGACTCTTCTCAAGCAATCATGATGATAGAAATAGCACTGATAAGAGTGGCAATATCTTACCTGGTACTGTGGTGGATTCTAAGATCTGTCATCCTACAGAATTTGACTTCTATTTATGCAGTCATGCAGGAATTCAGGGTACAAGTAGACCAGCACACTACCATGTCTTATGGGATGAGAACAATTTCACTGCTGATGAAATTCAGTCTCTCACCAACAACTTATGCTACACTTACGCAAGGTGTACAAGATCTGTTTCAGTAGTGCCTCCTGCATACTATGCTCATTTGGCAGCATACCGAGCTCGATTCTACATGGAACCTGGGGTTACTGAGATTTCTAAAGCGCGCGGTGCAAGATCAAAAGATGGTTCAGTTCGTCCACTCCCAGCTCTCAAAGAAAAAGTGAAGAATGTCATGTTCTACTGCTGA 2604 0.4232 MKDPKEDQEKSRRVVVQKSMELRRRGSRRRNQFSKGVDSQLVSKNLVFAARPGYGQLGTKCVVKANHFLADISASDLSHYTVKIIPEVRCRKTSKAIIAELVRVHKNTELGMRLPVYDGGRNLYTAAMLPFTYKDFTILLTQDDDSNGGATREREFKVVIKFAARVSMHQLRVLLSGKQVDTPQEALTVIDIVLRELAAQSYVSVGRFLYSPDFRKPQQLGGGLESWRGFYQSIRPTQMGLSLNIDMSSMAFIEPLPVIDFVAQILGKDVHSKPLSDADRVKIKKALRGVKVEVTHRGSFRRKYRISGLTSQPTRELNFPLDEKMNMKSVACKIVGGQRYTKGLNEKQITSLLKVSCQRPREQETDILQTIQENDYEYNPYAKEFGISVDSKLTSVDARVLPAPWLKYHDTGREKEYLPQVGQWNMMNKKVINGSTVRYWACINFSRSVQESTARGFCQQLVQMCQISGMEFSQDPVIPVYSAKPDLVKKALRYVHSASLDKLGGKELELLIAILPDNNGSLYGDLKRICETDLGLISQCCLTKHVFKINRQYLANVALKINVKMGGRNTVLLDALSWRIPLVSDIPTIIFGADVTHPESGEDSCPSIAAVVASQDWPEVTKYAGLVCAQPHREELIQDLFKCWKDPHHGVVYGGMIRELLLSFKKATGQKPLRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPSYQPPVTFVVVQKRHHTRLFSSNHDDRNSTDKSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADEIQSLTNNLCYTYARCTRSVSVVPPAYYAHLAAYRARFYMEPGVTEISKARGARSKDGSVRPLPALKEKVKNVMFYC 867
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60482g00003 867 Gene3D - 579 867 IPR036397 GO:0003676
Stsc60482g00003 867 CDD PAZ_argonaute_like 255 331 - -
Stsc60482g00003 867 Gene3D paz domain 250 339 - -
Stsc60482g00003 867 FunFam Argonaute 10 400 573 - -
Stsc60482g00003 867 Pfam Mid domain of argonaute 419 496 IPR032473 -
Stsc60482g00003 867 MobiDBLite consensus disorder prediction 1 22 - -
Stsc60482g00003 867 SUPERFAMILY Ribonuclease H-like 500 831 IPR012337 -
Stsc60482g00003 867 FunFam protein argonaute 10-like 579 867 - -
Stsc60482g00003 867 ProSiteProfiles PAZ domain profile. 256 331 IPR003100 GO:0005515
Stsc60482g00003 867 ProSiteProfiles Piwi domain profile. 510 831 IPR003165 GO:0003676
Stsc60482g00003 867 Pfam Argonaute linker 2 domain 364 408 IPR032472 -
Stsc60482g00003 867 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 332 831 - -
Stsc60482g00003 867 SMART Piwi_a_2 510 831 IPR003165 GO:0003676
Stsc60482g00003 867 MobiDBLite consensus disorder prediction 1 36 - -
Stsc60482g00003 867 CDD Piwi_ago-like 380 830 IPR045246 -
Stsc60482g00003 867 Gene3D - 400 573 - -
Stsc60482g00003 867 SMART DUF1785_2 203 255 IPR014811 -
Stsc60482g00003 867 Pfam Piwi domain 511 830 IPR003165 GO:0003676
Stsc60482g00003 867 Pfam N-terminal domain of argonaute 59 194 IPR032474 -
Stsc60482g00003 867 SUPERFAMILY PAZ domain 63 325 IPR036085 GO:0005515
Stsc60482g00003 867 Pfam Argonaute linker 1 domain 204 253 IPR014811 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60482g00003 Stsc-Chr60482 32537 37582 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60482g00003 42 867 Eukaryotic Initiation Factors Gene Family AT5G43810 71.165 0.0 1310
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60482g00003 K11593 - gmx:100798086 1548.87