Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60482g00002 ATGACGCTGGACGATGATAGCTCCATCTACGTCGGGGGTCTTCCCTACGACGCTTCCGAACAAACTATCCGCTCCGTCTTCCATTTATATGGCGCCATCCTTGATGTTAAGATTATCAATGATCATCGCACTAGGGGCAAGTGCTATTGCTTCGTTACTTTCACCAATACTAGGTCAGCAATTAATGCCATCAACGACATGAATGGCAGGACCATTGATGGACGTGTCATTAAAGTGAATGGGGTGAGGACTCGTGGTGGGAGATCAAATTTCGGTGGTAGAGACCGATATCATCATGCTGGTGAGAGGGATGTAGACTGGGATCACTCTAGAGATAGAGACCGAGGTTATGATCATGATAGGGATGGGCACAGGAATAGGAATGGTGATTGGCCTCGAAAACGTGATAGGTCTCGAGACCCTGACCAGGATAGGGATAGAAGAGTCGAGCATATGCATGATCGTGATCATGATGATCATGCTAGAGAACCTTCCTTAGATAAAGTTTGGAGTCGAGAGGATGACCGTGCTGGAAACAGACAAGACAATGGCAGGGCATATAGTGAAGATATGGATGGAGACCACAGCTTTGATTTGAATACAGACAGGAGGATGGATATGACCAGCGATCGTGATAGGATTCTTGATGAGGATAAAAATCAACAGTCAAGGAGAAACAATGATTTGAATGTTAATAACCATCATAACATGTATCTTTCATCAGATTCAAATGGCAATCCTAGTGATCAGGTAGAAGACGAATTAGAGCAATCAACTGAACAACTCGGTCAACTGAAAAAGGAGGTGTCTCAAATGGAGGAGAGATTGGAAGAGAAAAGACTTCTTGTTATGGATTTACAGAAGAAATCTAGGAAATTGGAGGAGGCACTGATTAACGCAAAGAAACACACTTCATATCGTCAGACGCAGTTGACCAATCTGCATAAATGTTTCGTGCAAGTAAACGAATGCACAGAAAGGCTTAAAGCCAGTGAAAAGGAACTTCAGGCTATAGTTGATGCATCATCAATATTAGAGAATGATGGTGACGGTGTTGGCTTTCAGGATGGACAAGTCGCAAATGGCAGATGCTAA 1095 0.4347 MTLDDDSSIYVGGLPYDASEQTIRSVFHLYGAILDVKIINDHRTRGKCYCFVTFTNTRSAINAINDMNGRTIDGRVIKVNGVRTRGGRSNFGGRDRYHHAGERDVDWDHSRDRDRGYDHDRDGHRNRNGDWPRKRDRSRDPDQDRDRRVEHMHDRDHDDHAREPSLDKVWSREDDRAGNRQDNGRAYSEDMDGDHSFDLNTDRRMDMTSDRDRILDEDKNQQSRRNNDLNVNNHHNMYLSSDSNGNPSDQVEDELEQSTEQLGQLKKEVSQMEERLEEKRLLVMDLQKKSRKLEEALINAKKHTSYRQTQLTNLHKCFVQVNECTERLKASEKELQAIVDASSILENDGDGVGFQDGQVANGRC 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60482g00002 364 SUPERFAMILY RNA-binding domain, RBD 4 96 IPR035979 GO:0003676
Stsc60482g00002 364 Gene3D - 2 98 IPR012677 -
Stsc60482g00002 364 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 2 195 - -
Stsc60482g00002 364 MobiDBLite consensus disorder prediction 106 224 - -
Stsc60482g00002 364 CDD RRM_SF 9 80 - -
Stsc60482g00002 364 Coils Coil 248 303 - -
Stsc60482g00002 364 MobiDBLite consensus disorder prediction 106 260 - -
Stsc60482g00002 364 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 84 IPR000504 GO:0003723
Stsc60482g00002 364 SMART rrm1_1 8 80 IPR000504 GO:0003723
Stsc60482g00002 364 PANTHER GEO13361P1-RELATED 7 189 - -
Stsc60482g00002 364 MobiDBLite consensus disorder prediction 225 252 - -
Stsc60482g00002 364 Coils Coil 321 341 - -
Stsc60482g00002 364 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 78 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60482g00002 Stsc-Chr60482 9882 12491 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60482g00002 7 79 Eukaryotic Initiation Factors Gene Family AT1G22760 30.137 1.53e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60482g00002 - - vun:114179118 414.846