Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60482g00001 ATGGCATCGCCATCGGAACTAAGCCTTGATTGCAAGCCACACAGCTACTCCATGCTTCTCAAATCGTTTGGAGATCATAATAATAATAGTAATGATCAGCACCAGCAGCAGAATCAGAGCTACAAGATTGAGGAGTTCCTCTCTCGCCTTGAAGAAGAACGTCTCAAGATCGATGCCTTCAAGCGTGAGCTTCCTCTCTGCATGCAGCTACTCACCAACGCTATGGAGGCGTCAAGGCAGCAACTGCAGGCGTTCAGAGTAAACAATAACCAAGGAACAACAAGGCCAGTGCTGGAAGAATTCATTCCCATAAAGCATTCAACCACCAATAACAACTCTGAAATCTCGGAGAAGGGTGCGGCGCCTTCCATGAACATGATGAGTGATAACAAGGCTAATTGGATGACATCTGCTCAACTATGGAGCCAACCAATCCAACAAGAAGGAACAACAACAACTGCGCATGCCACTCCTCCTCCACCTCCAAAAGATGGTGATAATAATAATGGATTCATGAGCATAAGCATGAGCCCCAAGCTAAGCCTGGAGAACAAGCAGAGGAACACTACTGCAGGAGGAGCGTTCCTTCCCTTCTCCAAGGAACGGAGGAATAATAATAACAAGTCAGGTTGTGCATTGGGAGGTGAGCTTGCACTTGGTTCCCCTGAGAAGGATGATAATAATAATAAGAGAGATCACTCATCCAATGATCAGCCCAAAGGAGCTACCACTACTACTACTACTGCTACTCCAGCTCCATCTACAACCACCAGCAGTCAAACTCATAGGAAAGCAAGAAGGTGCTGGTCACCCGACTTGCACCGTAGATTTGTTAATGCTCTTCAAATGCTCGGCGGATCTCAAGTGGCCACACCAAAACAGATAAGGGAGTTGATGAAGGTTGACGGTTTGACCAATGATGAAGTCAAAAGCCATCTCCAGAAATATAGGCTCCACACAAGAAGACCAAGCCCAACACCACAACCGGGTGCACCCGCACCGCACCTTGTCGTCCTAGGCGGAATCTGGGTCCCACCGGAGTACGCCACCGCTGCCGGAGCCCCTGCCGCCATCTACGGTGCTCACCATCCCGGCTCCCACGCCCCGCCGCCGCACTACTGCGCAGCCACACCAATGCCTCAGGAGTTCTACACGGCGGCTCCACCTCAGCCGCTGCTTCCGCCTCCGCCTCCTGCGCACCACCTGCACATGTACAAGGCGGCGGGACAGAGTAGCTCCCCGGAGTCGGAGGTAGGAGGAGGCGGTGAGCGGTCGGAGAGCATAGAGGATGGGAAGTCGGAGAGTAGTAGCTGGAAGGGTGAGAGTGAAGGAGAGAGGAAAGNNNNNNNNNNTTTGATTAATTAA 1365 0.5106 MASPSELSLDCKPHSYSMLLKSFGDHNNNSNDQHQQQNQSYKIEEFLSRLEEERLKIDAFKRELPLCMQLLTNAMEASRQQLQAFRVNNNQGTTRPVLEEFIPIKHSTTNNNSEISEKGAAPSMNMMSDNKANWMTSAQLWSQPIQQEGTTTTAHATPPPPPKDGDNNNGFMSISMSPKLSLENKQRNTTAGGAFLPFSKERRNNNNKSGCALGGELALGSPEKDDNNNKRDHSSNDQPKGATTTTTTATPAPSTTTSSQTHRKARRCWSPDLHRRFVNALQMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLHTRRPSPTPQPGAPAPHLVVLGGIWVPPEYATAAGAPAAIYGAHHPGSHAPPPHYCAATPMPQEFYTAAPPQPLLPPPPPAHHLHMYKAAGQSSSPESEVGGGGERSESIEDGKSESSSWKGESEGERKXXXXLIN 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60482g00001 454 MobiDBLite consensus disorder prediction 238 264 - -
Stsc60482g00001 454 MobiDBLite consensus disorder prediction 168 193 - -
Stsc60482g00001 454 SUPERFAMILY Homeodomain-like 261 322 IPR009057 -
Stsc60482g00001 454 MobiDBLite consensus disorder prediction 384 401 - -
Stsc60482g00001 454 MobiDBLite consensus disorder prediction 21 40 - -
Stsc60482g00001 454 NCBIfam myb-like DNA-binding domain, SHAQKYF class 264 319 IPR006447 GO:0003677
Stsc60482g00001 454 MobiDBLite consensus disorder prediction 109 128 - -
Stsc60482g00001 454 MobiDBLite consensus disorder prediction 20 40 - -
Stsc60482g00001 454 Pfam Myb-like DNA-binding domain 266 317 IPR001005 -
Stsc60482g00001 454 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 19 439 IPR044787 GO:0003700|GO:0006355
Stsc60482g00001 454 MobiDBLite consensus disorder prediction 422 446 - -
Stsc60482g00001 454 Gene3D - 263 321 - -
Stsc60482g00001 454 MobiDBLite consensus disorder prediction 134 154 - -
Stsc60482g00001 454 Coils Coil 43 63 - -
Stsc60482g00001 454 MobiDBLite consensus disorder prediction 134 268 - -
Stsc60482g00001 454 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 261 321 IPR017930 -
Stsc60482g00001 454 MobiDBLite consensus disorder prediction 223 237 - -
Stsc60482g00001 454 FunFam Myb family transcription factor 263 321 - -
Stsc60482g00001 454 MobiDBLite consensus disorder prediction 383 454 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60482g00001 Stsc-Chr60482 5465 7542 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60482g00001 1 385 G2-like Transcription Factor Family AT2G03500 52.956 7.12e-120 355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Stsc60482g00001 Myb_DNA-binding 9.8e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60482g00001 - - gmx:100807925 456.832