Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60480g00014 ATGAGGAAGAAGCTCGATACCCGTTTCCCTGCGGCTCGGATAAAGAAGATAATGCAAGCAGATGAAGATGTTGGAAAGATAGCACTTGCAGTTCCTGTTTTAGTTTCTAAAGCTCTGGAGCTATTTTTGCAAGACCTATGTAACCGCACCTATGATATAACTCTTCAGAGAGGAGCAAAGACCATGAACTCATTGCATTTAAAACATTGTGTACAAAGCTACAATGTCTTTGATTTTCTGAGGGATGTCGTCAGTAGGGTTCCTGACTATGGCCATGGCCATGGCCATGCAGAAGCTGGATCTGATGATCGGGTCCTTTATAAAAGGAGGAAGGCTGCTATTGATGATGGTAACGACAGTGATGAAGATGTTAAGAGGAGCAAGATGCATGAGTTGAGCCACACTGGTAGCACTGGAAGGGGAAGGGGCCGAGGCAGAGGAAGAGGCCGAGGCAGAGGCCGAGGAGCGAGAACTGCAGAAGGAGAGGCATATCACCCGGAACCTGAAATTGAGCCTCGTGCTTCAATTCCAGAGAGCAGTCAACATAATAGTAGCGCAGCTGTGGCAATATTTGATGGTTCACAGTCAGAGGAGTTACCAAAGGAGAATATTGCTGCCGTTGTCACGACTGAAAGCTCCGAGGTGCTCCCAAATGCTGTTCCTGGTTCTGACACAAACCAAAACCAGGACAAAAATGATAGCACAGCAGGCGCAGCCACAGCTGCAGCTGCAACTGGTGCCTCATTAGCTGAACCTGAAAATGAGAGCAAGCACGAGGAAATTCCCGGCTGGTCTCTCTCTGACGTGGACAAGATGGCCATTGACTCAATGCAGCTTGCGCAACTCAGCGGTCGACTAGAAGTTGATGAAGAAGATTACGATGAGGAAGGGTAA 894 0.481 MRKKLDTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCNRTYDITLQRGAKTMNSLHLKHCVQSYNVFDFLRDVVSRVPDYGHGHGHAEAGSDDRVLYKRRKAAIDDGNDSDEDVKRSKMHELSHTGSTGRGRGRGRGRGRGRGRGARTAEGEAYHPEPEIEPRASIPESSQHNSSAAVAIFDGSQSEELPKENIAAVVTTESSEVLPNAVPGSDTNQNQDKNDSTAGAATAAAATGASLAEPENESKHEEIPGWSLSDVDKMAIDSMQLAQLSGRLEVDEEDYDEEG 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60480g00014 297 FunFam dr1-associated corepressor homolog 1 86 - -
Stsc60480g00014 297 MobiDBLite consensus disorder prediction 115 137 - -
Stsc60480g00014 297 Gene3D Histone, subunit A 1 86 IPR009072 GO:0046982
Stsc60480g00014 297 MobiDBLite consensus disorder prediction 206 241 - -
Stsc60480g00014 297 MobiDBLite consensus disorder prediction 176 191 - -
Stsc60480g00014 297 MobiDBLite consensus disorder prediction 153 172 - -
Stsc60480g00014 297 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 7 125 - -
Stsc60480g00014 297 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 8 71 IPR003958 -
Stsc60480g00014 297 MobiDBLite consensus disorder prediction 115 264 - -
Stsc60480g00014 297 SUPERFAMILY Histone-fold 4 97 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60480g00014 Stsc-Chr60480 130014 133825 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60480g00014 1 286 CCAAT-HAP5 Transcription Factor Family AT3G12480 48.621 2.52e-73 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Stsc60480g00014 CBFD_NFYB_HMF 3.4e-19 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60480g00014 K21752 - gmx:100814712 373.629