Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60479g00015 ATGGCTTGTTCGATTCGTCCCACTCTCTCTTCCTTCCGCTTTTCATCCCTTGCCACTCGTTCTCTCTCCCGCTCCTTCCTTCGTCTTCCCGACATCACTACCAGGGGATTAGGTGAGTCCCATAAATTGAGAGCAACGGGGATACTGAGGCGTGATGGGAATATCATGAGAGTCATGGCTTCCCAAGCTAGCACCGCTGCTTCACCCGAAAACACACTCGAATGGGTCAAGCAAGATAAGCGAAGGATGCTTCATGTTGTCTACCGTGTTGGCGATTTGGACAGGACTATCAAGTTCTATACAGAGTGCCTCGGAATGAAGCTCCTCAGGAAGCGTGACATACCAGAGGAGAGATATACCAATGCCTTTCTTGGATATGGCCCCGAAGATTCCCACTTTGTTATTGAACTCACCTACAATTATGGAGTAGACAAGTATGACATTGGAGCTGGATTTGGACATTTTGGCATTGCTGTTGATGATGTTACAAAGACAGTGGAACTAATAAGAGCCAAGGGGGGCAAAATAACTAGAGAGCCTGGTCCCGTCAAGGGAGGCAGCACGGTTATTGCATTCATTGAAGATCCTGATGGCTACAAATTTGAACTTTTGGAAAGAGGACCCACTCCCGAGCCCTTGTGTCAAGTAATGCTTCGCGTGGGTGATCTTAAGCGATCCATAGAATTTTATGAGAAGGCGTTTGGCTTGGAGCTGCTTCGAACACGAGATAATCCTGAATACAAGTATACCATAGCAATGATGGGTTATGGTCCAGAAGATAAAAGTACTGTTCTGGAGTTGACTTACAATTATGGAGTCAAAGAATATGATAAAGGAAATGCTTATGCTCAGATAGCAATAGGCACAGATGATGTGTACAAAACCGCAGAAGCTGTTAAGTTAGCTGGAGGAAAGATTACTCGGGAACCTGGACCCCTGCCTGGCATCAACACAAAAATTACAGCATGCTTGGATCCTGATGGCTGGAAGACGGTTTTTGTAGATAATGTTGATTTCCTTAAAGAGCTGGAGTAA 1035 0.4551 MACSIRPTLSSFRFSSLATRSLSRSFLRLPDITTRGLGESHKLRATGILRRDGNIMRVMASQASTAASPENTLEWVKQDKRRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEERYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGAGFGHFGIAVDDVTKTVELIRAKGGKITREPGPVKGGSTVIAFIEDPDGYKFELLERGPTPEPLCQVMLRVGDLKRSIEFYEKAFGLELLRTRDNPEYKYTIAMMGYGPEDKSTVLELTYNYGVKEYDKGNAYAQIAIGTDDVYKTAEAVKLAGGKITREPGPLPGINTKITACLDPDGWKTVFVDNVDFLKELE 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60479g00015 344 SUPERFAMILY Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 82 208 IPR029068 -
Stsc60479g00015 344 CDD GlxI_Ni 83 204 - -
Stsc60479g00015 344 SUPERFAMILY Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 213 336 IPR029068 -
Stsc60479g00015 344 NCBIfam lactoylglutathione lyase 82 207 IPR004361 GO:0004462|GO:0046872
Stsc60479g00015 344 ProSitePatterns Glyoxalase I signature 1. 85 106 IPR018146 GO:0004462|GO:0046872
Stsc60479g00015 344 Gene3D - 209 344 IPR029068 -
Stsc60479g00015 344 FunFam Lactoylglutathione lyase 209 344 - -
Stsc60479g00015 344 PANTHER LACTOYLGLUTATHIONE LYASE 61 344 - -
Stsc60479g00015 344 Pfam Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 83 203 IPR004360 -
Stsc60479g00015 344 Pfam Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 215 330 IPR004360 -
Stsc60479g00015 344 ProSitePatterns Glyoxalase I signature 1. 215 236 IPR018146 GO:0004462|GO:0046872
Stsc60479g00015 344 FunFam Lactoylglutathione lyase 79 208 - -
Stsc60479g00015 344 ProSiteProfiles Vicinal oxygen chelate (VOC) domain profile. 212 336 IPR037523 -
Stsc60479g00015 344 Gene3D - 53 207 IPR029068 -
Stsc60479g00015 344 ProSiteProfiles Vicinal oxygen chelate (VOC) domain profile. 82 206 IPR037523 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60479g00015 Stsc-Chr60479 89717 93418 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60479g00015 215 333 Calmodulin-binding Proteins AT1G08110 28.276 6.20e-11 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60479g00015 K01759 - gmx:100780463 580.482