Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60479g00003 ATGGAGAGCACCGCCGAGAACGCCAAATTGAAGGAAATCGACCGCCCCTACGATTCTTTCCGAAAGAAGAGAATGCGACCTATCACCAGGCTCCCATCTTCCGAACTCGCAATCCTTTCTAACATGGAACAACCATCATCTTCATCCTCCTCCACCACTAACAACTGCACCGCCGCCGCCTCCGCTTCCCACGGTTTCATATCCGTAATCGGCCGAAGGAGAGTCATGGAGGACGCTGTTAGAGTTCTCCCTGGCTTCGTGGCGGCGGCGGAAGACTGTTCCGGAGGGTACGATTTCTTTGCGGTTTACGACGGGCACGGCGGAAGCATGGTGGCGAATGCTTGCCGCGAGAGGCTGCACGTGTTGTTGGCGGAGGAAATGAAGGCGGCGGCAGCGTTGGATTGGCATCACATGATGTGCTCCTGCTTCATGCAGATGGACCAAGAGATTGGAGGTGGCGACGGTAATGATAACGTGGCTGGAGGAGGGAACACCATGGGTTCTACGGCCACAGTGGTTGTGGTTGGAAAGGAGGAGATCGTGGTTGGCAATTGCGGAGACTCTAGGGCGGTGTTGTGCCGCGGCGGTGAAGCCCTGCCACTCTCACGTGATCATAAGCCTGATCGTGAAGATGAGAAAGAGAGAATAGAAGCGGCAGGAGGAAGAGTGATCGATTGGAATGGGAATCGTGTATTAGGTGTTCTAGCAACATCACGATCCATAGGGGACCACTGCATGAAGCCGTTTGTGATATCTCAACCGGAGATAGAGGTGTGGCGGAGAACAGATTCCGATGAGTTTGTGGTGGTGGCAAGTGACGGGCTGTGGGATGTTGTGTCAAACAGTTTAGCGTGCCAAGTGGTGAGAAGTTGTCTTTGTGGAAAGACGAGCGTGACCACAACTGCCGATGCAGCCGCCTCTTTGCTAGCGGAGCTCGCTGTGGCACGTGGTAGCAAAGACAACATCACTGTCATTGTCGTCCAGCTCATCAACACTACTTCTTCAACTTAA 1011 0.5391 MESTAENAKLKEIDRPYDSFRKKRMRPITRLPSSELAILSNMEQPSSSSSSTTNNCTAAASASHGFISVIGRRRVMEDAVRVLPGFVAAAEDCSGGYDFFAVYDGHGGSMVANACRERLHVLLAEEMKAAAALDWHHMMCSCFMQMDQEIGGGDGNDNVAGGGNTMGSTATVVVVGKEEIVVGNCGDSRAVLCRGGEALPLSRDHKPDREDEKERIEAAGGRVIDWNGNRVLGVLATSRSIGDHCMKPFVISQPEIEVWRRTDSDEFVVVASDGLWDVVSNSLACQVVRSCLCGKTSVTTTADAAASLLAELAVARGSKDNITVIVVQLINTTSST 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60479g00003 336 FunFam Protein phosphatase 2C 51 56 336 - -
Stsc60479g00003 336 SMART PP2C_SIG_2 82 329 IPR001932 -
Stsc60479g00003 336 ProSiteProfiles PPM-type phosphatase domain profile. 63 329 IPR001932 -
Stsc60479g00003 336 SMART PP2C_4 53 327 IPR001932 -
Stsc60479g00003 336 PANTHER PROTEIN PHOSPHATASE 49 328 IPR015655 GO:0004722|GO:0006470
Stsc60479g00003 336 Gene3D - 57 334 IPR036457 -
Stsc60479g00003 336 Pfam Protein phosphatase 2C 64 322 IPR001932 -
Stsc60479g00003 336 ProSitePatterns PPM-type phosphatase domain signature. 99 107 IPR000222 GO:0043169
Stsc60479g00003 336 CDD PP2Cc 63 329 IPR001932 -
Stsc60479g00003 336 SUPERFAMILY PP2C-like 59 329 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60479g00003 Stsc-Chr60479 19408 20822 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60479g00003 64 329 PP2C-type Phosphatase Gene Family AT4G26080 45.695 1.13e-80 250
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60479g00003 K14497 - gmx:100813248 410.609