Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60479g00002 ATGTTGGGAATGCAAGAAAGAAGCACGCATGTGGAACTCCACGACATCGGTTCATCCCTATCAAACCTCATACTGTCAAGCAGCACAAACACGCTGGACTCAATTTTCTGTCATTGTCCTCAACCCAACCCAACTTGTACCCCAAACACCATAATAGGCTCTTCAGGCTTCGAGCCTCTGGGTTCCTCTGTATACCTTCGCCAGAGAGACATCCTTCAGAAATTCTACCAGGAAAACAGGGCCAACAACATGCCTTATGTGCCAACAACATCCATGCTCACTCCTTCAATGACCACTTCTTTGATGAACCCCTGCAAGAAGAAGCTCTACAGAGGAGTGAGGCAGAGGCACTGGGGAAAATGGGTGGCGGAGATTAGGCTCCCTCAGAACAGAATGAGAGTGTGGCTCGGAACCTACGACACTGCCGAAGCTGCTGCTTATGCCTATGATCGTGCGGCTTACAAGCTCCGTGGAGAATACGCGCGCTTGAATTTCCCCAACCTCAAGGACCCAACCATGTTGGGATTCGGAGACTCAACGAGATTGAATGCTCTCAAGAACACTGTGGATGCAAAGATTCAAGCCATATGCCAGAAGGTCAAGAGGGAGAGAGCCAAGAAGAAGAATGCAGCCAAGAAGCTCAAATCGAATGCCGCTGGAGACATTCACACACCTAGCAAGAGACATCAAACGGAGAATGACAAGAATGACAAGATCAGCTCCGCTTCTTGTTCTTCTTGTTCCTCGCTGTCGCCGCCGCGGCCTTCTAATTATGATGATTGGGAAAAGGAGTTGTTATCTCCGTCTGTTTCGATGTTTCTGACTGATGAATCCATGGAATTTGACGATTGTTCCCTTGCGAGGATGCCATCCTTCGACCCTGAGTTGATTTGGGAAGTTCTGGCCAATTAG 912 0.4879 MLGMQERSTHVELHDIGSSLSNLILSSSTNTLDSIFCHCPQPNPTCTPNTIIGSSGFEPLGSSVYLRQRDILQKFYQENRANNMPYVPTTSMLTPSMTTSLMNPCKKKLYRGVRQRHWGKWVAEIRLPQNRMRVWLGTYDTAEAAAYAYDRAAYKLRGEYARLNFPNLKDPTMLGFGDSTRLNALKNTVDAKIQAICQKVKRERAKKKNAAKKLKSNAAGDIHTPSKRHQTENDKNDKISSASCSSCSSLSPPRPSNYDDWEKELLSPSVSMFLTDESMEFDDCSLARMPSFDPELIWEVLAN 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60479g00002 303 Gene3D AP2/ERF domain 109 167 IPR036955 GO:0003700|GO:0006355
Stsc60479g00002 303 MobiDBLite consensus disorder prediction 237 255 - -
Stsc60479g00002 303 SMART rav1_2 109 172 IPR001471 GO:0003700|GO:0006355
Stsc60479g00002 303 MobiDBLite consensus disorder prediction 207 261 - -
Stsc60479g00002 303 Pfam AP2 domain 110 159 IPR001471 GO:0003700|GO:0006355
Stsc60479g00002 303 FunFam Ethylene-responsive transcription factor 2 108 167 - -
Stsc60479g00002 303 ProSiteProfiles AP2/ERF domain profile. 109 166 IPR001471 GO:0003700|GO:0006355
Stsc60479g00002 303 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 23 301 - -
Stsc60479g00002 303 Coils Coil 197 217 - -
Stsc60479g00002 303 PRINTS Ethylene responsive element binding protein signature 132 148 IPR001471 GO:0003700|GO:0006355
Stsc60479g00002 303 PRINTS Ethylene responsive element binding protein signature 110 121 IPR001471 GO:0003700|GO:0006355
Stsc60479g00002 303 SUPERFAMILY DNA-binding domain 109 166 IPR016177 GO:0003677
Stsc60479g00002 303 CDD AP2 108 168 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60479g00002 Stsc-Chr60479 9867 10778 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60479g00002 12 303 AP2-EREBP Transcription Factor Family AT1G64380 49.068 3.32e-70 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc60479g00002 AP2 6.1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60479g00002 - - lang:109331119 313.538