Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60477g00033 ATGGTTCAAATGCCACCTCTTAACTCTAAAGTTTTTTACTTTCCACAAGGGCATGCAGAGCATGCTCATGGAGGAAAAGTGGATTTCACTTTCACAACAACAATCCCCCCTTTCATTCCTTGCTGCCTCTCTGGAATCAAATACATGGCAGATTCTGATACTGATGAGGTCTTTGTCAAGTTGTCTTTGACCCCTCTCTCTCTCACTCAACAAAACACTTGTACTAATGCATTGTTACTGGATTTGGAAGATGGTGATGATTGCGGTATTAAAAATAACAATAATAATGGAGGTGTTGATCAAGAGAAACCTGCTTCATTTGCAAAGACACTGACACAATCTGATGCCAACAATGGTGGAGGCTTCTCAGTGCCTCGTTACTGTGCTGAAACCATATTCCCAAGGTTGGATTATTCTGCTGATCCTCCTGTTCAGAACATTATTGCCAAAGATGTTCATGGAAATTCCTGGAAGTTTAGGCACATCTATAGAGGTACTCCTCGTAGGCACCTCTTGACCACTGGATGGAGCAATTTTGTGAGCCAGAAGAAGCTTGTAGCTGGTGATTCCATTGTGTTCTTGAGAGCTAAGGATGGTGATCTCTGTGTTGGGATAAGGAGGGCAAAGAAGGTGCCAATTGGCGGCGGAGGAGGCAGCGGCGAGGTGCCGGTGTCATCTGTAATTGAAGCTGTGAGTTGTGGTGTTAATGGAAGGCCATTTGAGGTTGTGTACTATCCAAGGGGAAGCACACCTGAGTTTTGTGTTAAGGCCTCAGTTGTGAGAGATTCAATGAAAGTGAGGTGGTGTTCTGGGATGAGGTTCAAGATGCCCTTTGAGACTGAAGATTCTTCTAGGATCAGTTGGTTCATGGGAACAATCTCTTCTGTTCAGATTCTTGATCCCATTCATTGGCCTAATTCTCCATGGCGTCTTCTTCAGGTTGTTTGGGATGAACCAGAATTACTACAACATGTCAAGTGTGTAAACCCTTGGTTGGTTGAATTAGTCTCAGACATTCCCACCTACCATCTTTCTCCATTCTCTCCAGCAAGAAAGAGACCAAGGTTTATTCACAACCAAGATTTTCACCTCATCAGTAACCAACTTCCAATAATGCCAGGATTTCCCAGCAATTATGATTATAATTATAATAATGATAATCATCTTGTTATGGATCATTCTTCTAAGTCCCTATTGATGAACATTCAAGAGAGTAACAGTAGTATTTCAGGCATACAGGGAGTCAGGCATGCTCAATTTCTTGATCTGTCTCCTTCTGATTTTCCCTTCTTCAACAAGCTTCCATCACAATCACAACACATGCATCTTATTAGTCCTTCTTATTGTGAGACCAATAAGAAGAACAATGCTGATATATCTTGCTTGTTAAGTGTTGGAAATACTGGCCATAATTTAAAGGAAGAACACAATAATGAAGAAGTGAAATCATCAACACCACCACATATCTTCTTGTTTGGACAAATGATTCACACTGAACAGCATTGTTCTAGTTCAAATGGGAATAGTTCATCTGATGAAGGGACTTTACAGAAGACACAATCAAATAATGCTTCTGAATTGCATGGAAATAGTAGTCCAGTAGAGAACCCTTCTTCTAATGGAGGGTCTCCCTGGTACAAAGATCAGCACAAATCTGGTCTTGGAACAGAAAATGTTAATCTACTTTGCTTGGCTCTATAG 1701 0.4115 MVQMPPLNSKVFYFPQGHAEHAHGGKVDFTFTTTIPPFIPCCLSGIKYMADSDTDEVFVKLSLTPLSLTQQNTCTNALLLDLEDGDDCGIKNNNNNGGVDQEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSADPPVQNIIAKDVHGNSWKFRHIYRGTPRRHLLTTGWSNFVSQKKLVAGDSIVFLRAKDGDLCVGIRRAKKVPIGGGGGSGEVPVSSVIEAVSCGVNGRPFEVVYYPRGSTPEFCVKASVVRDSMKVRWCSGMRFKMPFETEDSSRISWFMGTISSVQILDPIHWPNSPWRLLQVVWDEPELLQHVKCVNPWLVELVSDIPTYHLSPFSPARKRPRFIHNQDFHLISNQLPIMPGFPSNYDYNYNNDNHLVMDHSSKSLLMNIQESNSSISGIQGVRHAQFLDLSPSDFPFFNKLPSQSQHMHLISPSYCETNKKNNADISCLLSVGNTGHNLKEEHNNEEVKSSTPPHIFLFGQMIHTEQHCSSSNGNSSSDEGTLQKTQSNNASELHGNSSPVENPSSNGGSPWYKDQHKSGLGTENVNLLCLAL 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60477g00033 566 MobiDBLite consensus disorder prediction 500 551 - -
Stsc60477g00033 566 Pfam B3 DNA binding domain 107 208 IPR003340 GO:0003677
Stsc60477g00033 566 MobiDBLite consensus disorder prediction 500 546 - -
Stsc60477g00033 566 SUPERFAMILY DNA-binding pseudobarrel domain 102 208 IPR015300 -
Stsc60477g00033 566 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 527 IPR044835 GO:0003677|GO:0006355|GO:0009725
Stsc60477g00033 566 SMART B3_2 107 209 IPR003340 GO:0003677
Stsc60477g00033 566 ProSiteProfiles B3 DNA-binding domain profile. 107 209 IPR003340 GO:0003677
Stsc60477g00033 566 FunFam Auxin response factor 105 209 - -
Stsc60477g00033 566 Gene3D - 105 209 IPR015300 -
Stsc60477g00033 566 FunFam Auxin response factor 268 341 - -
Stsc60477g00033 566 CDD B3_DNA 106 207 IPR003340 GO:0003677
Stsc60477g00033 566 Gene3D - 267 340 - -
Stsc60477g00033 566 Pfam Auxin response factor 236 313 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60477g00033 Stsc-Chr60477 146180 148742 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60477g00033 1 556 B3 DNA Binding Superfamily AT4G30080 49.750 4.25e-175 509
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Stsc60477g00033 B3 2.4e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60477g00033 - - ahf:112803082 778.089