Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60477g00026 ATGAGTTCATCAAGGGAGAGTAGAGAGATGTTGAAAACACCAAGAAAGGAAGAAGAAGAAAATGAGGATGATGCATGTATGTATGCCTTGTTGTTGTCAAGCTTACAAGTGTTTCCTTTCATATTGAATGCTGCTATTGATCTCAACCTGTTTGAGATCTTCTCTGAGTTAGCCCACGAAAAAGGTGATGAATACTTGTCGGTTTCCCAAATCGCTTCAAAGCTTCCTACACATGTACAACACCCTCAACTCCACAACAGGCTGGATAGAATGCTTCGTGTGCTTGCCAGTTTCTCAGTTCTCAATTCGACTGCCGTACACATCAATGATGAAGATGGATCTGGCAGAGCTGAGAGGCTTTATAGAGTCACACATGCTGCTAAGTATTTTCTCAAGAATCAGACTCATAATCTAGCTTTCTTCTCAAATCTCAACTGCCACTCAGCTCTAACAAGTGTTTGGGTAAACATTAAGGATGCAATTGTTGAGGAAGGAATAGACCTTTTCAAGAAGGCTAATGGGATGCCTACGTGGGAGTACATGGGGAATGATTCAGAACTGAGGCTTACTTTCGACAAAGCAATGGAAGGAATATCTGCCACACATATGAGGAAATACTTGCAAGCATATGATGGATTTGAAGGAGTTTCAACCCTGGTTGATGTTGGAGGAGGTAATGGACAGTGCCTCAAAATGATTATCTCCAAGTACCCTAATATTAAGGGTATTAACTTTGATTTGCCTCAAGTCATTCAACATGCCCTACCCTATCCAGGTATTGAGCACGTTGGAGGAAACATGCATGAAACTATTCCAAAGGGGGATGCCATCATGCTTAAGGCTGTTTGTCACAATTGGTCAGATGAGAAGTGTGTACAAGTGCTGAAAAACTGTTATGAAGCACTTGAAGAGAAAGGGAAAGTGATTATCTTTGAGATGATCATGCCTGAAGAAGCAGATTCAAGCAATGGCACTAAGCTGGTCTCTATTGCTGACAATACAATGTTCCTGCATGGTGGAGGCAAGGAGAGAACAGAGAAAGAATTTGGGAAGCTCAGCAAAGACTCTGGATTCACCACTTACCATGTTGTTTGCCGCACTCTCTCTGTTTTGGGAGTCATTGAGTTTTATAAATAA 1137 0.416 MSSSRESREMLKTPRKEEEENEDDACMYALLLSSLQVFPFILNAAIDLNLFEIFSELAHEKGDEYLSVSQIASKLPTHVQHPQLHNRLDRMLRVLASFSVLNSTAVHINDEDGSGRAERLYRVTHAAKYFLKNQTHNLAFFSNLNCHSALTSVWVNIKDAIVEEGIDLFKKANGMPTWEYMGNDSELRLTFDKAMEGISATHMRKYLQAYDGFEGVSTLVDVGGGNGQCLKMIISKYPNIKGINFDLPQVIQHALPYPGIEHVGGNMHETIPKGDAIMLKAVCHNWSDEKCVQVLKNCYEALEEKGKVIIFEMIMPEEADSSNGTKLVSIADNTMFLHGGGKERTEKEFGKLSKDSGFTTYHVVCRTLSVLGVIEFYK 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60477g00026 378 Pfam Dimerisation domain 41 96 IPR012967 GO:0046983
Stsc60477g00026 378 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 137 376 IPR029063 -
Stsc60477g00026 378 MobiDBLite consensus disorder prediction 1 20 - -
Stsc60477g00026 378 FunFam Caffeic acid 3-O-methyltransferase 6 130 - -
Stsc60477g00026 378 Gene3D Vaccinia Virus protein VP39 131 378 IPR029063 -
Stsc60477g00026 378 PIRSF O-mtase 6 378 IPR016461 GO:0008168
Stsc60477g00026 378 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 30 378 IPR016461 GO:0008168
Stsc60477g00026 378 PANTHER O-METHYLTRANSFERASE 32 368 IPR016461 GO:0008168
Stsc60477g00026 378 Gene3D - 6 130 IPR036388 -
Stsc60477g00026 378 Pfam O-methyltransferase domain 154 358 IPR001077 GO:0008171
Stsc60477g00026 378 SUPERFAMILY "Winged helix" DNA-binding domain 21 134 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60477g00026 Stsc-Chr60477 126985 128920 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60477g00026 21 378 Monolignol Biosynthesis Gene Families AT5G54160 47.500 4.02e-104 310
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60477g00026 - - ag:AAB48059 391.349