Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60477g00024 ATGGCCACCTATCACTGCATGTACACCTCCTCTTTCCTTTCTGTTTTTCTTCTCTATGGCTGCTTCCTCTCTCCCATCATGGTCTTCTCTCAGCTATCTCAATACCAAGCTACCACCATGGCCAATCTCTCAAAGCTACTTGCTCCTTCTCTTCCATGGAACCCTGCCAATCACACAAATCCATGCTCATGGAATGGAGTCACTTGTGACTCTACCAAATCCCATGTCATCATGATTTCTCTATCTGGAAACTCTCTCAATTCCAGTGACTTCCTTCCTGTTCTCTGCCAAATTCAAACTCTGCAGCATATTGATGTGTCCAACAACAGTCTCTCCTCAATCCCTGATGACTTCATTACTGAATGTGGAAAGATTAAGGACTTAAAGCTGCTCAATTTCAGTGGAAACAACTTATCAGGTTCTTTACTTACTTTCCATGGTTTTGCTGCACTTGAATACCTGGACATGTCTTTCAATGCATTGGAAAGTAGTATTGATATTCAGTTAGATGAAATGACTAACCTCAAGACTTTGAACCTTACTCAAAACAAGTTCAATGGTCATCTTCCCACCAAATTGGGGAACTCCATGGTATTGGAGCAACTTGTGCTGGCTAAAAACCAGTTTCAAGGAGAAATCCCTGATGAACTGTTTAGTTATGAAAACTTGACTTTGATTGATCTCAGGGAAAATAACCTTTCAGGTACAATTCCTAGCCATATTGTACACCTATCTAAGTTGCAAACCTTGTTTCTTTCCTCTAATCACCTCAGTGGTCCAATTCCAATGTCAATCCTGAACATCACAACCCTTGTAAGATTTGCTGCAAACCAGAACAATTTCAGTGGTTCTTTACCTTCTGCCATTTCAAATAATCTTATCAGTTTGGATCTTAGTTACAATAATTTGTTCGGTCCCATTCCAAAAAACTTTCTATCATCACCAAGAATGGAGGTTTTGGATTTGTCCAAGAATAAGTTAAGTGGAACATTATTACTTGCTAGTATTTCTCCTAGCATGGTTAGGTTGAGATTAGGGAACAATTTGCTGCAGGGGAACATTCCTTCAGATGCTTTTGCAAAAGCTCAGAATTTGACTTACTTGGAGCTGGAAAGTAATGAGCTGACAGGAGGAATTCCAGCTATATTGGGTTCTTGCAACAACCTGGCATTGCTGGATTTATCTCAGAATCATTTGAGTGGGATATTGCCACCAGAGCTTGGAAATCTAAGCAATCTTCAAGTCTTAACTCTTCAAATGAACAAGCTTAATGGCACAATCACAACTCCATTTCAAAATGGCCAACTACAAAAGTTGTTAAAACTGAATTTGAGCATGAACTCTTTGACCGGATCAATTCCATCCCAGATATCAAGCTTGAGCAACCTTAGGTTCCTGCACTTGCAACAGAACCTCCTGAGTGGTTCCGTACCTTCATCCATTGGCAATTCACCAGCCCTTCTGGATCTCCAACTAGGTGGAAACCAACTAAGTGGTGTTATCCCAAGTATGCCATTGACTCTACAGGTTGCCTTGAATCTTAGTCACAACAACTTTAGTGGATCCATTCCTAGAAGTTTGAGTATTTTGTATAACCTAGAAATATTGGATCTCTCAGATAACAAATTTTCTGGTGGAGTTCCTGATGATCTAACCAAAATGGCCGCTTTGACACAGTTGTTACTTACTAACAATCAGCTTTCTGGTGTGCTTCCAAAATTTAGTGGTTTTGTTCATGTTGACTACAATGGAACCAGTTTGGTACCAGCTCCTACCTCGGACAACACAACACCAAACTATTCCCAGGTATCTAGGAAGAAGGGATCATCTGTGGTTGTGGCAATCCTTGTTGCAATTGCAGCAGCCGTGTTTCTTGCTGGCCTTGTCACTCTGCTGGTTGTGCTGGTGTCAAGACGCTATTCTAAGGTAAACAATGAGCATGTACATTCAGGTGAAGACCATGGCCTTCCTCAGATTCTCCAAAGTCGTTTGTTAACANNNNNNNNNNTCTCCAAGGCCATGGAAGCTGTTGCTGAAACATCAAATGTTACTTTGAAGACCAAGTTTTCAACTTATTACAAGGCCATCATGCCATCTGGATCAATCTATTTTGTTAAGAAGATGAATTCAACTGAAAGGGCATTGCCGGCGAGCAGTCATGCTAGATTCGGGAAAGAGATGGAGGCCTTGGCGAAATTGAACAATTCAAATGTCATGACTCCTTTAGCCTATGTTTTGTCCAGTGATACAGCTTACACATTATATGAGTTTGTCTCAAATGGATCCCTCTTTGATGTTCTTCATAATGGAAGCATGGGAAACTCTTTGGATTGGGCTAGCAGATATAGTATAGCTGTTGGTGTGGCTCAAGGTCTCTCTTTTCTTCATGGCATGGCCTCAAGTCCTATACTACTTCTTGACCTGTCAAGTAAAAGTATTATGCTCAAGTCCCTCAAGGAGCCTCTGGTTGGAGATATTGAACACTACAAGGTCATTGATCCTTCCAGGAGTACCGGCAATTTTTCTGCTGTTGCTAGTTCTGTTGGCTATGTTCCTCCAGAATATGCATATACAATGAAAGTAACAGTGGCTGGGAATGTATATAGCTTTGGGGTGATCCTGCTTGAACTGCTGACAGGAAAGCCTGCAGTGACAGAGGGAACCGAATTGGTGAAGTGGGTTTTGCGTAATTCAATGAACAAGGATTACATTCTTGATTCCAATGTTAGCAAAACATCTCAAGCTGTTAGAAACCAGATGATAGCAATTCTGCAGATTGCTCTTGTTTGTGTTAGTACAACCCCAGGAGCAAGACCAAAGATGAAGAGTGTGCTAAGAATGCTCCTTAATGCTAGATAG 2859 0.4103 MATYHCMYTSSFLSVFLLYGCFLSPIMVFSQLSQYQATTMANLSKLLAPSLPWNPANHTNPCSWNGVTCDSTKSHVIMISLSGNSLNSSDFLPVLCQIQTLQHIDVSNNSLSSIPDDFITECGKIKDLKLLNFSGNNLSGSLLTFHGFAALEYLDMSFNALESSIDIQLDEMTNLKTLNLTQNKFNGHLPTKLGNSMVLEQLVLAKNQFQGEIPDELFSYENLTLIDLRENNLSGTIPSHIVHLSKLQTLFLSSNHLSGPIPMSILNITTLVRFAANQNNFSGSLPSAISNNLISLDLSYNNLFGPIPKNFLSSPRMEVLDLSKNKLSGTLLLASISPSMVRLRLGNNLLQGNIPSDAFAKAQNLTYLELESNELTGGIPAILGSCNNLALLDLSQNHLSGILPPELGNLSNLQVLTLQMNKLNGTITTPFQNGQLQKLLKLNLSMNSLTGSIPSQISSLSNLRFLHLQQNLLSGSVPSSIGNSPALLDLQLGGNQLSGVIPSMPLTLQVALNLSHNNFSGSIPRSLSILYNLEILDLSDNKFSGGVPDDLTKMAALTQLLLTNNQLSGVLPKFSGFVHVDYNGTSLVPAPTSDNTTPNYSQVSRKKGSSVVVAILVAIAAAVFLAGLVTLLVVLVSRRYSKVNNEHVHSGEDHGLPQILQSRLLTXXXXSKAMEAVAETSNVTLKTKFSTYYKAIMPSGSIYFVKKMNSTERALPASSHARFGKEMEALAKLNNSNVMTPLAYVLSSDTAYTLYEFVSNGSLFDVLHNGSMGNSLDWASRYSIAVGVAQGLSFLHGMASSPILLLDLSSKSIMLKSLKEPLVGDIEHYKVIDPSRSTGNFSAVASSVGYVPPEYAYTMKVTVAGNVYSFGVILLELLTGKPAVTEGTELVKWVLRNSMNKDYILDSNVSKTSQAVRNQMIAILQIALVCVSTTPGARPKMKSVLRMLLNAR 952
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60477g00024 952 Pfam Protein kinase domain 688 946 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60477g00024 952 Gene3D Ribonuclease Inhibitor 292 593 IPR032675 -
Stsc60477g00024 952 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 41 948 - -
Stsc60477g00024 952 Pfam Leucine rich repeat N-terminal domain 53 70 IPR013210 -
Stsc60477g00024 952 SUPERFAMILY RNI-like 261 570 - -
Stsc60477g00024 952 Gene3D Ribonuclease Inhibitor 30 189 IPR032675 -
Stsc60477g00024 952 SMART serkin_6 682 948 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60477g00024 952 Gene3D Ribonuclease Inhibitor 190 291 IPR032675 -
Stsc60477g00024 952 Gene3D Phosphorylase Kinase; domain 1 672 757 - -
Stsc60477g00024 952 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 758 952 - -
Stsc60477g00024 952 Gene3D Transferase(Phosphotransferase) domain 1 758 952 - -
Stsc60477g00024 952 SUPERFAMILY L domain-like 60 355 - -
Stsc60477g00024 952 ProSiteProfiles Protein kinase domain profile. 678 952 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60477g00024 952 Pfam Leucine rich repeat 512 567 IPR001611 GO:0005515
Stsc60477g00024 952 Pfam Leucine rich repeat 339 399 IPR001611 GO:0005515
Stsc60477g00024 952 Pfam Leucine rich repeat 100 161 IPR001611 GO:0005515
Stsc60477g00024 952 Pfam Leucine rich repeat 199 257 IPR001611 GO:0005515
Stsc60477g00024 952 PRINTS Leucine-rich repeat signature 389 402 - -
Stsc60477g00024 952 PRINTS Leucine-rich repeat signature 530 543 - -
Stsc60477g00024 952 SUPERFAMILY Protein kinase-like (PK-like) 689 948 IPR011009 -
Stsc60477g00024 952 SMART LRR_typ_2 172 196 IPR003591 -
Stsc60477g00024 952 SMART LRR_typ_2 244 268 IPR003591 -
Stsc60477g00024 952 SMART LRR_typ_2 338 361 IPR003591 -
Stsc60477g00024 952 SMART LRR_typ_2 436 459 IPR003591 -
Stsc60477g00024 952 SMART LRR_typ_2 98 121 IPR003591 -
Stsc60477g00024 952 SMART LRR_typ_2 530 553 IPR003591 -
Stsc60477g00024 952 SMART LRR_typ_2 460 484 IPR003591 -
Stsc60477g00024 952 SMART LRR_typ_2 554 576 IPR003591 -
Stsc60477g00024 952 Pfam Leucine Rich Repeat 292 312 IPR001611 GO:0005515
Stsc60477g00024 952 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 332 586 - -
Stsc60477g00024 952 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 34 192 - -
Stsc60477g00024 952 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 238 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60477g00024 Stsc-Chr60477 119084 122321 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60477g00024 151 952 Receptor kinase-like Gene Family AT2G41820 37.170 2.65e-147 457
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Stsc60477g00024 Pkinase 1.1e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60477g00024 - - adu:107491546 1452.19