Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60477g00022 ATGGATAAAAAAGAAAGCCTTTGTACTAATGGCTGGACACAGATTAATGGTGGAAATGGATTGCAGACAAACTTACCCTCTGATCCTTCAAGTTCAGATTATGGGGTGAGGGTAGAAACACCTTTCAAAGATTTTAACCAACCCTCTCAAATTCAGAGTCTACTTTCCAAGAATGTCACTGAGATTGCTGTTCAAGAAAACTGTGCACCAAGTGACTCATCTCAAACCAATATACTCCGAAATTGGGATGCCAGTTTGATGTTGAATAATCTTTCCTTCTTGGAGAAAAAGGTTCATCAACTGCAGGAGATAGTGTGCTTCATTGGTAGTCAAAAATGCCAAACTTTCGGACAGCCTAATGAACTCTTAACTCAGGAACAACAGCTCATCACTGCTGATCTTACATCAATTATTGTCCAGCTGATCTCTTCTGCAGGTAGTCTTCTCCCTTCTGCCAGGCATACCCTTACAAATACTACTCCATTGATTCAACAGCTTTGCCAGCTTCAGGGGATTACGGTTCCTTCTGCATCCGGCTCAGGCCAGAGTAGTGTTCAACAGCAAAATACTGGGGCAAATAAATTATCTGAGATTTCAGTGCAGAATGATCAATCAAATAATTGTGAACTGGAGCAAAAGTACAAAGTGGAAGAACATGAATTGAAGGATGAGGAAGATGGTGATGATGGAGAAAACCTTCTACCTGGTTCCTATGAGATTTTACAATTAGAAAAAGAAGAAATCCTTGCACCACATACACATTTCTGTGCAATTTGTGGGAAGGGATTCAAGAGAGATGCAAATCTCCGGATGCACATGCGAGGCCATGGTGATGAGTACAAAACTGCAGCTGCCCTTGCAAAACCGCATAAAGAATCCGAGTCGCAACCTGAGCTCATCAAGAGGTATTCATGCCCGTATGCTGGTTGCAAGCGTAATAAGGATCACAAAAAGTTTCAACCTCTGAAAACAATTTTGTGTGTCAAAAATCATTACAAAAGAACACACTGTGACAAGAATTACACTTGCAGCAGATGCCACATAAAGAAGTTTTCAGTCATGGCTGATCTTAAAACTCATGAAAAGCACTGTGGCAAGGATAAATGGCTTTGTTCATGTGGCACAACATTTTCAAGGAAGGACAAGCTTTTTGGACACATTGCTCTTTTCCAAGGCCATACACCTGCCATTCCCATGGATGACAACAAAAGAACGACATGCCTTCCAGATCACGACAACCAAGATAATAGTAAAGCAGTAGGTATGAGCTTCAGTTTTGGGNNNNNNNNNNCCTTCAAGTGA 1302 0.4094 MDKKESLCTNGWTQINGGNGLQTNLPSDPSSSDYGVRVETPFKDFNQPSQIQSLLSKNVTEIAVQENCAPSDSSQTNILRNWDASLMLNNLSFLEKKVHQLQEIVCFIGSQKCQTFGQPNELLTQEQQLITADLTSIIVQLISSAGSLLPSARHTLTNTTPLIQQLCQLQGITVPSASGSGQSSVQQQNTGANKLSEISVQNDQSNNCELEQKYKVEEHELKDEEDGDDGENLLPGSYEILQLEKEEILAPHTHFCAICGKGFKRDANLRMHMRGHGDEYKTAAALAKPHKESESQPELIKRYSCPYAGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKNYTCSRCHIKKFSVMADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHIALFQGHTPAIPMDDNKRTTCLPDHDNQDNSKAVGMSFSFGXXXXFK 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60477g00022 433 SUPERFAMILY beta-beta-alpha zinc fingers 252 280 IPR036236 -
Stsc60477g00022 433 Gene3D Classic Zinc Finger 239 306 - -
Stsc60477g00022 433 SMART c2h2final6 303 336 IPR013087 -
Stsc60477g00022 433 SMART c2h2final6 341 363 IPR013087 -
Stsc60477g00022 433 SMART c2h2final6 254 276 IPR013087 -
Stsc60477g00022 433 ProSitePatterns Zinc finger C2H2 type domain signature. 256 276 IPR013087 -
Stsc60477g00022 433 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 66 415 IPR044300 GO:0010044|GO:0010447
Stsc60477g00022 433 MobiDBLite consensus disorder prediction 215 234 - -
Stsc60477g00022 433 ProSiteProfiles Zinc finger C2H2 type domain profile. 254 281 IPR013087 -
Stsc60477g00022 433 MobiDBLite consensus disorder prediction 178 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60477g00022 Stsc-Chr60477 110595 112827 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60477g00022 221 403 C2H2 Transcription Factor Family AT1G34370 86.486 1.06e-119 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc60477g00022 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60477g00022 - - gmx:100170687 588.186