Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60477g00020 ATGGAAGAATACTCAGAGGAAGATTATGAGTTCCTCAATCTTAGCCTTTCTGTTACTACTACTCCTTCCTCTACACAAACCAAAAACAACGATATGACCATGATGATGAGGATGAAGAAGAAGAACAACAACAACTACAACTCTGTATCATCCTATGAAGGTAAGATCTTCAGGCTCCTCCAAATGAGGGAAAACATGCTAAGACAAGACCACCATAACCACCACCATCACCATCACCATCACCAAAGAAGAAAAGCACTACTACTTGATGACCATAACAACAACAACAATGGCGGACTCCCTCTCATCCACTTGCTCCTCACAACCGCCACCGCCATTGACGACCACAACACCAACAACATTGCTGCATCTCTCGAGAATCTCACAGATCTGTACCAAACAGTTTCCCTAACAGGCGACTCCGTTGAGCGTGTTGTGGCTTATTTCGCTGATGGCCTCGCCGCAAGGCTCCTCACAAAGAAATCTCCATTCTATGACATGCTCATGGAGGAACCAACTTGTGAAGAAGAGTTTCTTGCATTCACAGATCTCTATAGAGTCTCACCTTACTACCAATTCGCTCATTTCACTGCAAACCAAGCAATCCTAGAAGCCTTTGAAGAAGAAGAAGAAAGGAACAACCGTTCAATCCACGTCATTGACTTCGATGTCTCGTACGGATTCCAGTGGCCATCTCTAATCCAATCTCTCTCAGAGAAAGCTTCAAGCGGAAACCGCGTATCTTTAAGAATCACTGGATTTGGAAGCACTCTGAAGGAGCTTCAAGAAACGGAGTCCAGATTGGTGAGCTTCTCGAAAGGGTTTGGTAACCTTGTGTTTGAGTTTCAAGGGTTGTTGAGAGGGTCAAGGATCATGAATGTTCGGAAGAAGAAGAACGAGAGTGTTGCAGTGAACCTTGTTTCTTATCTAAACAGTGGAAGCAAGAGCAGCTTCTTGATGAATTTGTCAGAGACATTGGGATTGGTTCGTTCTCTGAGGCCTTCGGTTGTGGTGTTGGTGAAGCAAGAAGGTAGCAGGAGCGTTAGAACGTTCTTGTCAAGGTTCACAGAGTCATTGCATTACTTTGCGGCCATGTTTGATTCTCTTGATGATTGTCTTCCACTTGAGAGCGCAGAGAGGTTGAGGATTGAGAAGAAGCTTCTTGGGAAAGAGATAAAGAGCATGCTCAACTGTGACATGGACATGGAGGAGGGTGTGGAGGAGTGTCCAAAGTATGAGAGGATGGAAGCGTGGAAAGGGAGAATGGAGAATCATGGCTTTGTTGGAATGAAGATGAGCTCGAAATCAGTGATGCAAGCGAAGCTGCTTCTCAAGATGAGGACTCATTATTATTATTGTCCACCGCTTCAATTTGATGATGATAATAATGGTGGGAGTGGCGGTTTCAGGGTTTGTGAAAGGGAGGACGGTACAGCCATATCTTTGGCGTGGCAGAATAGGTTTCTTCTCACTGTTTCAGCATGGCAATTACCACCTTCATCATCATCATAA 1512 0.4471 MEEYSEEDYEFLNLSLSVTTTPSSTQTKNNDMTMMMRMKKKNNNNYNSVSSYEGKIFRLLQMRENMLRQDHHNHHHHHHHHQRRKALLLDDHNNNNNGGLPLIHLLLTTATAIDDHNTNNIAASLENLTDLYQTVSLTGDSVERVVAYFADGLAARLLTKKSPFYDMLMEEPTCEEEFLAFTDLYRVSPYYQFAHFTANQAILEAFEEEEERNNRSIHVIDFDVSYGFQWPSLIQSLSEKASSGNRVSLRITGFGSTLKELQETESRLVSFSKGFGNLVFEFQGLLRGSRIMNVRKKKNESVAVNLVSYLNSGSKSSFLMNLSETLGLVRSLRPSVVVLVKQEGSRSVRTFLSRFTESLHYFAAMFDSLDDCLPLESAERLRIEKKLLGKEIKSMLNCDMDMEEGVEECPKYERMEAWKGRMENHGFVGMKMSSKSVMQAKLLLKMRTHYYYCPPLQFDDDNNGGSGGFRVCEREDGTAISLAWQNRFLLTVSAWQLPPSSSS 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60477g00020 503 Pfam GRAS domain family 102 496 IPR005202 -
Stsc60477g00020 503 ProSiteProfiles GRAS family profile. 93 496 IPR005202 -
Stsc60477g00020 503 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 73 490 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60477g00020 Stsc-Chr60477 105682 107236 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60477g00020 84 497 GRAS Transcription Factor Family AT1G14920 31.702 1.27e-52 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Stsc60477g00020 GRAS 4.1e-88 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60477g00020 - - gmx:100798251 605.905