Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60477g00017 ATGGAGTCGCCAAGCAAGAGCTCCCTCGAGATGGAGACGGCAATAATAACATCAACAGAGAGACCCACTTCCCTCTGGAAGATCATTTTAGTTGCATCCGTTGCCGCTGGCATTCAGTTTGGGTGGGCCCTACAGTTATCCCTACTCACACCATACGTCCAACTATTGGGGGTCCCACATATGTGGTCCTCCTTCATTTGGCTCTGTGGGCCCATCTCCGGGATGGTTGTCCAGCCCATTGTCGGATACTACAGCGATCGTTGCAACTCAAGACTCGGCCGCCGTCGCCCCTTTATCATCGCCGGAGCTCTTTCTGTTATCATTGCCGTCTTCCTCATCGGATTTGCTGCTGACCTTGGTCACTCCTTCGGTGATGACATCACCAAGAAAACTCGCCCTCGAGCTGTTGCCATCTTCGTCATTGGCTTTTGGGTCCTTGATGTCGCCAACAACATGCTCCAAGGACCTTGCCGCGCCTTCTTGGGGGATCTCTCCGCCGGAAACGACGGCAGGATCCGAATGGCCAATGCCTTCTTCTCATTCTTCATGGCCATGGGTAACATCCTGGGCTACGCCGCAGGTTCATATGAAGGGCTACACAGAGGCTTCCCCTTCACGCGTACGGAGGCATGTGACATCTTCTGCGCTAACCTCAAGAGCTGCTTCTTCATCTCCATCATCCTCCTCCTTCTCGTCACTAGCCTCGCCATGTTCTTGGTTCATGACGTTCCCCTCTCAGAGCTCAAGAAATTCGATGATGACATTGAATCAAATGAGAATACTTCAGCTTCTGCAGGGTGCTTCGGAGAGATCGTGGGGGCGTTGAAGCAGCTGAAGAAGCCAATGTGGATCTTGATGCTTGTAACAGCCATCAACTGGATTGGTTGGTTCCCATTCTTCTTGTTCAACACTGACTGGATGGGCAAGGAGGTGTACGGTGGTGATGTGGGTGAGGAGGCCTATGATAAGGGTGTCCGTGCTGGTTCATTGGGTCTGATGATAAACGCGGTCGTTTTGGCAGTAATGTCATTGGCGGTTGAACCGGCTAGCAAAGTGATGGGTGGAGCAAAGAACCTTTGGGGTATTGTTAATTTTATCCTTGCCGGTGGCTTGCTTTCTACTATTTACATCACCAAGGTCGCCGAGTTTGACCGCAAACTCGCCGGCCATTATGTTCCACCAGCTACCGGCGTAAGGGCTGGCGCCTTGATCTTCTTCGCCGTCATCGGTATTCCACTTGCGATCAATTTCAGCGTTCCATTTGCTCTAGCATCCGTCTACTCAAGTACTAGTGGGGCAGGACAAGGTTTGTCTCTTGGGGTTCTTAATCTTGCTATTGTGATTCCACAGATGATAGTGTCAACAGTGAGTGGACAAGTGGATGCTTGGTTCGGAGGTGGAAACTTGCCAGCATTTGTGATGGGTGCAATAGCAGCTGCTATCAGTGGTGCAATGGCGCTTGTCTTGCTGCCCTCAATAAAGAAATCAGATGAAGCCAAAGCTTCTATGGTCGTCGGTGGCGGACACTGA 1530 0.5137 MESPSKSSLEMETAIITSTERPTSLWKIILVASVAAGIQFGWALQLSLLTPYVQLLGVPHMWSSFIWLCGPISGMVVQPIVGYYSDRCNSRLGRRRPFIIAGALSVIIAVFLIGFAADLGHSFGDDITKKTRPRAVAIFVIGFWVLDVANNMLQGPCRAFLGDLSAGNDGRIRMANAFFSFFMAMGNILGYAAGSYEGLHRGFPFTRTEACDIFCANLKSCFFISIILLLLVTSLAMFLVHDVPLSELKKFDDDIESNENTSASAGCFGEIVGALKQLKKPMWILMLVTAINWIGWFPFFLFNTDWMGKEVYGGDVGEEAYDKGVRAGSLGLMINAVVLAVMSLAVEPASKVMGGAKNLWGIVNFILAGGLLSTIYITKVAEFDRKLAGHYVPPATGVRAGALIFFAVIGIPLAINFSVPFALASVYSSTSGAGQGLSLGVLNLAIVIPQMIVSTVSGQVDAWFGGGNLPAFVMGAIAAAISGAMALVLLPSIKKSDEAKASMVVGGGH 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60477g00017 509 NCBIfam sucrose/proton symporter 24 494 IPR005989 GO:0005886|GO:0008515|GO:0015770
Stsc60477g00017 509 Gene3D MFS general substrate transporter like domains 20 489 IPR036259 -
Stsc60477g00017 509 Pfam MFS/sugar transport protein 40 193 - -
Stsc60477g00017 509 FunFam Sucrose transporter SUC2 26 247 - -
Stsc60477g00017 509 SUPERFAMILY MFS general substrate transporter 28 495 IPR036259 -
Stsc60477g00017 509 PANTHER SUGAR TRANSPORTER 24 489 - -
Stsc60477g00017 509 CDD MFS_SLC45_SUC 28 474 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60477g00017 Stsc-Chr60477 86535 88388 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60477g00017 2 492 Sucrose Transporter Gene Family AT1G71890 61.323 0.0 618
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60477g00017 K15378 - gmx:100785899 664.84