Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60477g00014 ATGGGAAGAACGATGCTCCTCATCATCAGGCTCTTATTGATATCTTCATGTGTATTCTCAATGGCATCAGCATCAAGAAGAGTACCTTCTTCTTCTTCTTCTAGCAACATTGATTGGTGGTGCAACCTAACACCACACCCTGGAACATGCAAATACTACTTATTAGGTCAAATCAACCAACACCACCACACAAGAACAAAAATCAAGCACAAAACCGAGTTGAGGACCATGCTTGTGCAATCCGCATTAGAGGAAGCAACCATCATGCAAAAGGAAGCACATGCTTTGGAGCAAAACTTGTTGAAGACGAAGAACCATGAAGCCGTGCATGGAGATTGCTTGAAGCTCTACGATAACATCGTCTTCCATCTCAAGCGTACCCTCCAATGTCTCAATGAGTCTCATCATCACAACTGTTCAGCGGTTGATGCACAAACATGGCTCAGCACTGCTCTCACAAACATCCAAACCTGTCAAACTGGTGCACAAGAACTCAGCATTCAAGATTTCAATGTTTCATCAAAGAGCACAAATGTCACTGAGATGGTAAGGAACAGCTTAGCCATCAACTTGGAATTCGTCAAAACCATGAAACGACCGCAACAAGAAGCAGAAGCAGAAGCGGAATCAGAAGTATTAGAAGAAGCAGAAGCAGAAGAAGACGATTTTCCAAGCTGGTTTTCAGGTCACGAAAGGAAGCTTCTGGCATCTAGTGAGATAAAGGCGCATATTGTGGTGGCCAAAGACGGATCAGGGGATTTCAAGACGGTGCAAGAAGGGCTTGACGCAGCGGCGAAGAGAGCGGTGAAGACAAGCAGGTTTGTAATACGCGTGAAGAAAGGAATATACAGAGAAAACATAGAGGTTGAGAAAAACAACGATAACGTGATGCTTGTTGGTGATGGCATGAGAAACACCATCATTACCGGCAGCAGAAGTTCTAAAGACGGTTACACAACTTACAGCTCCGCAACTGCCGGCATTGACGGCCTTCACTTCATCGCCAGAGACATCACTTTCCAAAACACCGCGGGCCCAGCTAAGGGCCAGGCTGTGGCCCTCAGATCCGCCTCCGACCTCTCTGTATTCTATAAGTGCGGCATCGTTGGGTACCAAGACACGCTCATGGCGCACGCACAGCGGCAGTTCTACAGGCAGTGCTACATCTACGGCACCGTTGATTTCATCTTCGGCAACGCCGCCGTGGTGTTCCAAAACTGTCACATATTTGCAAGAAGGCCCCTGGATGGTCAAGCCAACACAATCACTGCGCAGGGCAGAGGGGATCCCTTCCAGAACACCGGAATCTCTATCCACAAATCGGTTATCAAGGCCGCACCCGATCTGGTTCCTGTTTTGGACAAGGTTCAGACCTTCTTGGGCCGGCCCTGGCAGCAGAACGCCAGGGTTGTTGTCATGAGGACTTACTTGGACTCTCTTATAAGCCCATTGGGCTGGGATGAATGGAACGGATCTGACTTTGCTCTTGACACTCTCTATTTTGGAGAGTATGAGAATTATGGGCCTCGTTCGGATACTACCAAACGAGTTAAGTGGCCCGGTTATCATGCCATTTCAAACCCAAATGAGGCCTCACAATTCACTGTGACTTCTCTTCTTGCTGGTCGCACCTGGTTGCCTACCACTTCTGTTCCATTCATCTCTGGCCTCTGA 1674 0.4797 MGRTMLLIIRLLLISSCVFSMASASRRVPSSSSSSNIDWWCNLTPHPGTCKYYLLGQINQHHHTRTKIKHKTELRTMLVQSALEEATIMQKEAHALEQNLLKTKNHEAVHGDCLKLYDNIVFHLKRTLQCLNESHHHNCSAVDAQTWLSTALTNIQTCQTGAQELSIQDFNVSSKSTNVTEMVRNSLAINLEFVKTMKRPQQEAEAEAESEVLEEAEAEEDDFPSWFSGHERKLLASSEIKAHIVVAKDGSGDFKTVQEGLDAAAKRAVKTSRFVIRVKKGIYRENIEVEKNNDNVMLVGDGMRNTIITGSRSSKDGYTTYSSATAGIDGLHFIARDITFQNTAGPAKGQAVALRSASDLSVFYKCGIVGYQDTLMAHAQRQFYRQCYIYGTVDFIFGNAAVVFQNCHIFARRPLDGQANTITAQGRGDPFQNTGISIHKSVIKAAPDLVPVLDKVQTFLGRPWQQNARVVVMRTYLDSLISPLGWDEWNGSDFALDTLYFGEYENYGPRSDTTKRVKWPGYHAISNPNEASQFTVTSLLAGRTWLPTTSVPFISGL 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60477g00014 557 Pfam Pectinesterase 243 542 IPR000070 GO:0030599|GO:0042545
Stsc60477g00014 557 NCBIfam pectinesterase inhibitor domain 7 190 IPR006501 GO:0004857
Stsc60477g00014 557 ProSitePatterns Pectinesterase signature 2. 389 398 IPR033131 -
Stsc60477g00014 557 Pfam Plant invertase/pectin methylesterase inhibitor 36 189 IPR006501 GO:0004857
Stsc60477g00014 557 Gene3D Invertase/pectin methylesterase inhibitor family protein 31 192 IPR035513 -
Stsc60477g00014 557 Coils Coil 79 99 - -
Stsc60477g00014 557 PANTHER PECTINESTERASE 17 548 - -
Stsc60477g00014 557 SMART PMEI_2 32 189 IPR006501 GO:0004857
Stsc60477g00014 557 Gene3D - 236 557 IPR012334 -
Stsc60477g00014 557 Coils Coil 199 221 - -
Stsc60477g00014 557 CDD PMEI-like_3 39 195 - -
Stsc60477g00014 557 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 35 190 IPR035513 -
Stsc60477g00014 557 SUPERFAMILY Pectin lyase-like 239 556 IPR011050 -
Stsc60477g00014 557 FunFam Pectinesterase 237 557 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60477g00014 Stsc-Chr60477 60025 61698 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60477g00014 33 557 Carbohydrate Esterase AT5G51500 52.941 0.0 575
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60477g00014 K01051 - gmx:100806133 744.962