Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60477g00013 ATGGGAAAAGGTTTGCATCTTTCTTCCCTATCCCTGCTTGTTATCTGTGTTGTTGCAGTGACATATGCAAGAGCAGCAACAACCTCTTCTTCGAATTTCATAAAATCATCTTGCAGCACCACCAGGTTTCCAAGCGTGTGTGTTGAGTCTCTGTCTGTGTATGCAAACAGCATCCAGCAAGACCCTCACGAGCTGGCCCAAACTGCCCTCTCTCTGAGCCTGAACAGGAGTGAGTCCACAAGGGCATTTGTGACAAAGTGCAACAAGTTGAGGGGCCTCAAGCCCAGAGAGTACGCAGCTCTGAAGGACTGTGCAGAGGAGATAAGTGACAGCTGTGACAGGCTCAGCAAGTCCCTCAAGGAGCTCAAGCTTTGCAAGGTTAAAGGTGAGGATTTCAGATGGCACATCAGCAATGTTGAGACCTGGGTTTCTTCTGCTTTGACTGATGACAGCACTTGTGGTGATGGCTTCTCCGGCAACGCTCTCTCCGGTAAGATGAAGGATTCCATTAGGGGTACAATGGTAAATCTCGCTCAGGTCACTAGCAATGCCTTGTCACTCATCACCCAGTATGCTGCTAAATACTAG 588 0.4881 MGKGLHLSSLSLLVICVVAVTYARAATTSSSNFIKSSCSTTRFPSVCVESLSVYANSIQQDPHELAQTALSLSLNRSESTRAFVTKCNKLRGLKPREYAALKDCAEEISDSCDRLSKSLKELKLCKVKGEDFRWHISNVETWVSSALTDDSTCGDGFSGNALSGKMKDSIRGTMVNLAQVTSNALSLITQYAAKY 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60477g00013 195 FunFam Pectin methylesterase inhibitor 1 29 191 - -
Stsc60477g00013 195 PANTHER PECTINESTERASE INHIBITOR-LIKE 10 187 - -
Stsc60477g00013 195 Gene3D Invertase/pectin methylesterase inhibitor family protein 26 191 IPR035513 -
Stsc60477g00013 195 NCBIfam pectinesterase inhibitor domain 8 191 IPR006501 GO:0004857
Stsc60477g00013 195 CDD PMEI-like_3 36 193 - -
Stsc60477g00013 195 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 31 190 IPR035513 -
Stsc60477g00013 195 Pfam Plant invertase/pectin methylesterase inhibitor 32 187 IPR006501 GO:0004857
Stsc60477g00013 195 SMART PMEI_2 29 187 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60477g00013 Stsc-Chr60477 53596 54505 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60477g00013 24 188 Carbohydrate Esterase AT3G14310 30.120 3.21e-21 88.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60477g00013 - - gmx:100305900 271.937