LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc60477g00013	ATGGGAAAAGGTTTGCATCTTTCTTCCCTATCCCTGCTTGTTATCTGTGTTGTTGCAGTGACATATGCAAGAGCAGCAACAACCTCTTCTTCGAATTTCATAAAATCATCTTGCAGCACCACCAGGTTTCCAAGCGTGTGTGTTGAGTCTCTGTCTGTGTATGCAAACAGCATCCAGCAAGACCCTCACGAGCTGGCCCAAACTGCCCTCTCTCTGAGCCTGAACAGGAGTGAGTCCACAAGGGCATTTGTGACAAAGTGCAACAAGTTGAGGGGCCTCAAGCCCAGAGAGTACGCAGCTCTGAAGGACTGTGCAGAGGAGATAAGTGACAGCTGTGACAGGCTCAGCAAGTCCCTCAAGGAGCTCAAGCTTTGCAAGGTTAAAGGTGAGGATTTCAGATGGCACATCAGCAATGTTGAGACCTGGGTTTCTTCTGCTTTGACTGATGACAGCACTTGTGGTGATGGCTTCTCCGGCAACGCTCTCTCCGGTAAGATGAAGGATTCCATTAGGGGTACAATGGTAAATCTCGCTCAGGTCACTAGCAATGCCTTGTCACTCATCACCCAGTATGCTGCTAAATACTAG	588	0.4881	MGKGLHLSSLSLLVICVVAVTYARAATTSSSNFIKSSCSTTRFPSVCVESLSVYANSIQQDPHELAQTALSLSLNRSESTRAFVTKCNKLRGLKPREYAALKDCAEEISDSCDRLSKSLKELKLCKVKGEDFRWHISNVETWVSSALTDDSTCGDGFSGNALSGKMKDSIRGTMVNLAQVTSNALSLITQYAAKY	195

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc60477g00013	195	FunFam	Pectin methylesterase inhibitor 1	29	191	-	-
	Stsc60477g00013	195	PANTHER	PECTINESTERASE INHIBITOR-LIKE	10	187	-	-
	Stsc60477g00013	195	Gene3D	Invertase/pectin methylesterase inhibitor family protein	26	191	IPR035513	-
	Stsc60477g00013	195	NCBIfam	pectinesterase inhibitor domain	8	191	IPR006501	GO:0004857
	Stsc60477g00013	195	CDD	PMEI-like_3	36	193	-	-
	Stsc60477g00013	195	SUPERFAMILY	Plant invertase/pectin methylesterase inhibitor	31	190	IPR035513	-
	Stsc60477g00013	195	Pfam	Plant invertase/pectin methylesterase inhibitor	32	187	IPR006501	GO:0004857
	Stsc60477g00013	195	SMART	PMEI_2	29	187	IPR006501	GO:0004857

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc60477g00013	Stsc-Chr60477	53596	54505	Dispersed/Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc60477g00013	24	188	Carbohydrate Esterase	AT3G14310	30.120	3.21e-21	88.6

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc60477g00013	-		-	gmx:100305900	271.937

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