Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60477g00005 ATGGCGTCTTCCTCCAGCAGCGGATTGACCTTCAAGGTGCATCCCTTGGTCATCGTCAACATCTCCGACCACTACACTCGCGTCAAGTCTCAGCTCAACCCTCCTAATTCCAATGCTTCTTCCAATTCCCCTCCTCCGCGTGTCTACGGTGGCGTCATCGGGGTCCAGAAGGGTCGCACCGTCGAGATCTTCAACAGCTTCGAGCTCCTCTACGACCCTTCCACCCACTCCCTCGACCGCGCCTTCCTCGACAAGAAGCAGGACCTCTACAAGAAGGTCTTCCCTCACTTCTACATCCTCGGTTGGTACTCCACCGGCACCGACGCCCTCGAATCCGACATGCACATTCACAAAGCTTTGATGGACATCAATGAGAGTCCCGTTTATGTTCTCCTCAACCCTTCCATCAATCATTCTCAGAGGGACCTCCCTGTCACTATTTTTGAAAGCGAACTACATGTCATAGACGGAATTCCTCAACTTATTTTTGTTCGTTCCACTTATACTATCGAGACTGTCGAAGCAGAACGGATCTCAGTGGACCATGTTGCTCATCTCAAGCCGTCCGACGGTGGTTCGGCAGCCACACAATTGGCTGCTCACCTTACTGGTATACACAGTGCCATCAAAATGCTTCATAGCAGAATTAAGGTGCTGCATCACTATTTGCTTGCAATGCAAAAAGGTGATGTTCCTTGCGAAAATTCACTGTTAAGACAAGTGTCAAGTCTCCTGAGAAGATTACCTGCTATTGAATCTGGAAAATTTCAAGATGATTTCTTAATGGAATACAATGACACTCTATTGATTAGCTACCTTGCCATGTTGACCAACTGCTCAAGTACAATGAATGAATTGGTAGACAAATTCAATACTGCATACGATAGGCATAGCAGAAGGGGTGGACGAACTGCTTTTATGTGA 924 0.4762 MASSSSSGLTFKVHPLVIVNISDHYTRVKSQLNPPNSNASSNSPPPRVYGGVIGVQKGRTVEIFNSFELLYDPSTHSLDRAFLDKKQDLYKKVFPHFYILGWYSTGTDALESDMHIHKALMDINESPVYVLLNPSINHSQRDLPVTIFESELHVIDGIPQLIFVRSTYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLHSRIKVLHHYLLAMQKGDVPCENSLLRQVSSLLRRLPAIESGKFQDDFLMEYNDTLLISYLAMLTNCSSTMNELVDKFNTAYDRHSRRGGRTAFM 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60477g00005 307 FunFam COP9 signalosome subunit 6 1 188 - -
Stsc60477g00005 307 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED 3 298 - -
Stsc60477g00005 307 Gene3D Cytidine Deaminase, domain 2 1 188 - -
Stsc60477g00005 307 ProSiteProfiles MPN domain profile. 11 154 IPR037518 -
Stsc60477g00005 307 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 7 126 IPR000555 GO:0005515|GO:0008233|GO:0008237
Stsc60477g00005 307 Pfam Maintenance of mitochondrial structure and function 174 288 IPR024969 -
Stsc60477g00005 307 CDD MPN_CSN6 9 303 IPR033859 GO:0000338|GO:0008180
Stsc60477g00005 307 SMART pad1_6 10 153 IPR000555 GO:0005515|GO:0008233|GO:0008237
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60477g00005 Stsc-Chr60477 16340 19765 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60477g00005 2 258 Eukaryotic Initiation Factors Gene Family AT2G39990 23.774 3.10e-09 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60477g00005 K12179 - gmx:100786026 551.206