Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60477g00004 ATGTCACTTCTTCTTCTTCCTTTTCTTCTCATGCTAACACTTACATCATCTTCTGATGATGCTGTTAGGCTGCTTATCACATTCAAGAACTCCCATGTCTCCTCCGATCCAAACAACTTCCTGGCTGACTGGTCCTCCTCCAACTCAAAGCCCTGCACCTGGAGGGGTGTCACGTGCTCCGCTCAAGCTCAACTCACATCCATAAACCTAACCGGTGCTGGCCTCGTCGGCACCCTTCACCTCCCAACTCTCACGGCTTTGCCTTCTTTGCACCACCTTATATTGCGTGCAAACTACTTCTCCTTAGGGAACCTCTCTGTCTCTCCCTTCTGCGCTCTCCAAACGCTTGATCTTTCCTCCAACAACTTCTCTGGAGACTTCCCCTTCCACCTCCTTCTTCCATGTCGAGCTCTCACTTCTCTCAACGTCTCAAGGAATCTCATTACTGGAGCCACACCAAAGGAACCTGGTTTTCGCTTCGCTGCTTCTCTTCTTCACCTTGACTTGTCCAGGAACCAGCTTTCCCAGCCTCAGATTTTGACTAACACTCTCTCCAATTGTCAGGCTTTGCTTCTGCTTAATTTATCTGACAACCGAATCTCCGCTCAACTCACTCAAACTATTCTTACTGCTTCTTGTGCCAACCTCACTACTCTGGACCTCTCCCATAATCACCTCTCCGGGGAGTTGCCGCAGAGTTTTGTGGTGGATTCTTTGGAGCTTCTGGATCTTTCAGGCAACAATTTTTCAGGGGTGTTCTCAAGGTTTGGTTTTGGGAGCTGCAGGAACCTTGTTAGGTTGAGTTTATCTCACAATGCGCTGTCTGGTGGGGAGTTTCCAAGCAGCTTGAGGAATTGCGAGGCTCTGGAGACTGTGGATGTTTCTCACAATGAGCTTGGACCAAATATCCCCGGGGCTCTTCTTGCAGGTCTCAAGAGCTTGAAGGAACTGTTTCTGGGGAGAAATAATTTCAATGGGGAGATTCCTGCTGAGCTTGGAATGGCTTGTGATTCCCTTGTGACTCTTGATCTGTCTGATAATAAGCTTTCAGGTGAGTTGCCTTTCACTTTTGGAGACTGTTCTTCTCTGCAGACTCTTAACCTTGCTAAGAATTATCTCTATGGAGATTTCCTCACTTCAGTTGTAAGCAAACTTTCAAGTCTTAGGTACCTTTATGTGCCATTCAATAACATCACGGGGCCTGTTCCTTTCTCTCTTGCCAATTGCACACAGCTTCAGGTTCTTGACCTCAGTTCCAATGGCTTTACCGGCACCATCCCCTCTGGGCTTTGCTCTTCTTCCTCGCCTCTCCAAAAGATGCTTCTTGCCGACAATTACCTGGAAGGGAGGGTGCCTGCTCAGCTTGGTGGCTGCAAGAATTTGAGGACAATTGATTTCAGCTTCAACAACTTGAATGGCCCTATACCCTCTCAAGTTTGGACCCTTCCCAATCTTTCAGACTTAATTATGTGGGCTAACAACCTTACTGGAGAGATTCATGAAGGCATATGCAGCAATGGTGGAAACCTAGAGACCTTGATTCTTAACAACAATTTGATTTCAGGCTCCATTCCAAGCTCAATTGCCAATTGCACCAATATGGTTTGGGTGTCGCTGGCTAGCAACCGCATTACCGGAGAAATACCTGCCGGTATTGGGAATCTAAAGAGACTTGCCATCCTCCAATTAGGCAACAATTCACTTGCTGGACAGATCCCACCAGAGCTTGGGAAATGTGAAAGCCTCATATGGTTGGATTTGAATAGTAACAACCTCACTGGTACTATCCCCTCTGATCTTGCCAATCAAGCTGGCCTGGTTATGCCCGGAACTGTTTCTGGGAAGCAGTTTGCATTTGTTAGAAATGAAGGTGGGACAAGCTGCAGGGGAGCCGGAGGTTTAGTTGAATTCGAAGATATCAAGGCCTCCAGGCTTGAGAGTTTTCCTATGGTGCATTCCTGCCCATTAACTCGAATATACTCCGGCGTCACAGTTTATACATTTTCCAAGAATGGCAGCATGATCTACCTTGATCTTTCCTACAATTTCTTGTCTGGAACCATTCCTGCAAGCTTAGGGGCAATGTCCTATCTACAGGTCCTAAATATGGGACACAATAAGCTAGCTGGGAACATTCCAGACAGTTTTGGTGGTCTAAAAGCCATAGGAGTGCTTGATCTCTCCCATAATAACCTTCAAGGATTCATCCCTGCTTCATTAGGAACTCTGTCTTTTCTGAGTGACCTTGATGTCTCCAATAATAACCTCACAGGCGCCATTCCCCCCGGTGGTCAGCTAACAACTTTCCCTTCATCTAGGTATGAAAACAACTCTAATCTCTGTGGTGTTCCTTTGCCACCTTGCCACGCCACTTCGGATCGAAATCACTCACCAGGTTACCATGCTTGGAAGAAGAAGCAACCTATTGCAGTTGGGATAATCATTGGCCTTGTTTCCTTTGTCTTGTTCTTTCTTGCATTTGTTCTTGCTTTGTATCAAGTCAAGAAGTATCATTGGAAGGAGGAACAGAGAGAAAAGTACATAGAAAGTCTTCCAACTTCAGGAAGCAGCAGTTGGAAACTATCAAGCATTCCTGAGCCTCTCAGCATCAATGTTGCCACCTTTGAGAAACCTCTGCGAAAGTTGACATTCGCGCATCTTCTCGAGGCTACTAACGGTTTCAGTGCTGAAACCTTGATAGGGTCTGGTGGTTTTGGTGAAGTCTATAAGGCTAAGCTGAAAGATGGTTGTGTTGTTGCTATCAAGAAGCTTATTCATGTAACAGGTCAGGGAGACAGAGAGTTCATGGCTGAAATGGAAACCATTGGCAAGATTAAGCACAGAAACCTTGTTCCATTGCTCGGTTACTGTAAAATTGGAGAGGAGAGGCTTCTTGTGTATGAGTATATGAAATGGGGAAGTCTAGAGGCTGTTCTTCATGAGCGTGGCGGAGGAGGAGGTGGTTCGAAGCTTGATTGGGCAGCAAGAAAGAAGATCGCCATAGGGTCAGCAAGAGGACTTGCATTTCTACACCATAGTTGTATTCCTCACATCATACACCGCGACATGAAGTCCAGCAATATTCTTCTAGATGAAAATTTTGAGGCCAGAGTTTCAGATTTCGGGATGGCAAGATTAGTTAATGCCCTGGACACACACCTCAGTGTGAGCACACTTGCTGGAACACCGGGTTATGTACCTCCTGAGTACTATCAGAGTTTTAGGTGCACAACTAAGGGTGATGTTTATAGTTATGGTGTCATACTGCTTGAGCTTTTATCTGGGAAGAGGCCCATTGACTCCTCTGAGTTTGGTGATGACAACAATCTTGTTGGATGGTGTAAGCAACTTCATAGGGAGAAAAGAAGTAGTGAAATTCTAGATCCTGACTTAATCAAGCAAGCATCTAGTGAAGGTGAACTCTACCAGTGTTTGAGAATTGCCTTTGACTGTTTAGATGAGAGACCTTATCGGAGACCAACTATGATTCAAGTTATGGCAATGTTTAAGGAGCTTCAAGCTGATACAGATAATGATGTTCTTGATGCCTTCTCTCTCAAATGCAATGTCATTGAGGAAGCATAA 3585 0.4555 MSLLLLPFLLMLTLTSSSDDAVRLLITFKNSHVSSDPNNFLADWSSSNSKPCTWRGVTCSAQAQLTSINLTGAGLVGTLHLPTLTALPSLHHLILRANYFSLGNLSVSPFCALQTLDLSSNNFSGDFPFHLLLPCRALTSLNVSRNLITGATPKEPGFRFAASLLHLDLSRNQLSQPQILTNTLSNCQALLLLNLSDNRISAQLTQTILTASCANLTTLDLSHNHLSGELPQSFVVDSLELLDLSGNNFSGVFSRFGFGSCRNLVRLSLSHNALSGGEFPSSLRNCEALETVDVSHNELGPNIPGALLAGLKSLKELFLGRNNFNGEIPAELGMACDSLVTLDLSDNKLSGELPFTFGDCSSLQTLNLAKNYLYGDFLTSVVSKLSSLRYLYVPFNNITGPVPFSLANCTQLQVLDLSSNGFTGTIPSGLCSSSSPLQKMLLADNYLEGRVPAQLGGCKNLRTIDFSFNNLNGPIPSQVWTLPNLSDLIMWANNLTGEIHEGICSNGGNLETLILNNNLISGSIPSSIANCTNMVWVSLASNRITGEIPAGIGNLKRLAILQLGNNSLAGQIPPELGKCESLIWLDLNSNNLTGTIPSDLANQAGLVMPGTVSGKQFAFVRNEGGTSCRGAGGLVEFEDIKASRLESFPMVHSCPLTRIYSGVTVYTFSKNGSMIYLDLSYNFLSGTIPASLGAMSYLQVLNMGHNKLAGNIPDSFGGLKAIGVLDLSHNNLQGFIPASLGTLSFLSDLDVSNNNLTGAIPPGGQLTTFPSSRYENNSNLCGVPLPPCHATSDRNHSPGYHAWKKKQPIAVGIIIGLVSFVLFFLAFVLALYQVKKYHWKEEQREKYIESLPTSGSSSWKLSSIPEPLSINVATFEKPLRKLTFAHLLEATNGFSAETLIGSGGFGEVYKAKLKDGCVVAIKKLIHVTGQGDREFMAEMETIGKIKHRNLVPLLGYCKIGEERLLVYEYMKWGSLEAVLHERGGGGGGSKLDWAARKKIAIGSARGLAFLHHSCIPHIIHRDMKSSNILLDENFEARVSDFGMARLVNALDTHLSVSTLAGTPGYVPPEYYQSFRCTTKGDVYSYGVILLELLSGKRPIDSSEFGDDNNLVGWCKQLHREKRSSEILDPDLIKQASSEGELYQCLRIAFDCLDERPYRRPTMIQVMAMFKELQADTDNDVLDAFSLKCNVIEEA 1194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60477g00004 1194 SUPERFAMILY Protein kinase-like (PK-like) 876 1176 IPR011009 -
Stsc60477g00004 1194 Gene3D - 612 669 - -
Stsc60477g00004 1194 ProSitePatterns Protein kinases ATP-binding region signature. 900 923 IPR017441 GO:0005524
Stsc60477g00004 1194 ProSiteProfiles Protein kinase domain profile. 894 1172 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60477g00004 1194 PRINTS Leucine-rich repeat signature 216 229 - -
Stsc60477g00004 1194 PRINTS Leucine-rich repeat signature 719 732 - -
Stsc60477g00004 1194 FunFam serine/threonine-protein kinase BRI1-like 2 855 969 - -
Stsc60477g00004 1194 SUPERFAMILY L domain-like 380 504 - -
Stsc60477g00004 1194 SUPERFAMILY L domain-like 482 788 - -
Stsc60477g00004 1194 SMART serkin_6 894 1169 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60477g00004 1194 Gene3D Ribonuclease Inhibitor 14 125 IPR032675 -
Stsc60477g00004 1194 Pfam Brassinosteroid receptor island domain 605 669 IPR045381 -
Stsc60477g00004 1194 Gene3D Transferase(Phosphotransferase) domain 1 970 1188 - -
Stsc60477g00004 1194 Pfam Protein kinase domain 896 1167 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60477g00004 1194 Gene3D Ribonuclease Inhibitor 161 788 IPR032675 -
Stsc60477g00004 1194 Pfam Leucine rich repeat 338 398 IPR001611 GO:0005515
Stsc60477g00004 1194 Pfam Leucine rich repeat 215 274 IPR001611 GO:0005515
Stsc60477g00004 1194 SMART LRR_typ_2 695 718 IPR003591 -
Stsc60477g00004 1194 SMART LRR_typ_2 555 579 IPR003591 -
Stsc60477g00004 1194 SMART LRR_typ_2 743 766 IPR003591 -
Stsc60477g00004 1194 SMART LRR_typ_2 311 335 IPR003591 -
Stsc60477g00004 1194 SMART LRR_typ_2 409 433 IPR003591 -
Stsc60477g00004 1194 SMART LRR_typ_2 719 742 IPR003591 -
Stsc60477g00004 1194 SMART LRR_typ_2 236 259 IPR003591 -
Stsc60477g00004 1194 SMART LRR_typ_2 482 506 IPR003591 -
Stsc60477g00004 1194 SMART LRR_typ_2 508 531 IPR003591 -
Stsc60477g00004 1194 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1018 1030 IPR008271 GO:0004672|GO:0006468
Stsc60477g00004 1194 FunFam Leucine-rich repeat receptor-like protein kinase TDR 357 608 - -
Stsc60477g00004 1194 Gene3D Phosphorylase Kinase; domain 1 857 969 - -
Stsc60477g00004 1194 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 256 352 - -
Stsc60477g00004 1194 Pfam Leucine rich repeat N-terminal domain 19 60 IPR013210 -
Stsc60477g00004 1194 FunFam Brassinosteroid LRR receptor kinase 970 1174 - -
Stsc60477g00004 1194 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 667 787 - -
Stsc60477g00004 1194 SUPERFAMILY L domain-like 35 375 - -
Stsc60477g00004 1194 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 675 1163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60477g00004 Stsc-Chr60477 10006 13936 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60477g00004 24 1194 Receptor kinase-like Gene Family AT1G55610 64.237 0.0 1504
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Stsc60477g00004 Pkinase 6.7e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60477g00004 - - gmx:102670093 1668.67