Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60477g00003 ATGGCTGGGGTTGATGAAAATGTTGGGGAATGGAGTGGTCCAAGCCCGAGTCCCAGAGCGTTTTTCTCAAGAATGTTAGGGGAAGATAATGAAAATGGAGCAGAAGAAGATGGTGAGAAGATGGTGTCACGTGGTGGTCTTGTTGAGAGGATGGCTGCTAGAGCTGGCTTCAATGCACCCAGGTTGAACACTCACAGCATTAGATCTACTGACCTTTCACTCAATTCTGATGTTCCTTCTCCTTACTTCACCATCCCACCTGGTCTCAGTCCTACCACGCTTTTAGATTCTCCTGTCTTCCTTGCTAATTCACTCGCTCAGCCATCTCCAACAACTGGCAAGTTTCCGTTCATCTCAAACGCCAACATCCGCTTCCCAGAATTATCATCTGATGCTCCTGAAAGATGTAAAGATAACAGCTTTGATGATATTTATGCATCATCCTTTGCTTTCAAGCCTGCAACAGATTCAGGCTCCTCTTTTTATCAAGGAGCTGCCAGAAAAATGAATTCAACTACAATAGCTCAACAATCTCTTCCTGGTGTTGAGGTCTCTGTTCAGTCGGAAAATTCTTTTCAATCGCAAAGTGCTGCTGATGCAGTAAAATCTCAAACTGAGAATAAAAGTGGCCTCCGTCTTCAGTCAGACTTTATTGAGTCATCTCCTCAACAGGATAACGGGATTAACAATTTATCAGGTGATCAAAGGGTTTTTGATACTGTTGGTGGTAGCATTGAACATTCCCCACAACTTGAAGAGCAAGCAGATGAAGAGGGAGAGCAAAGAGGGAATGGAGACTCAATGGCTGCTGCTGGTGGTGCACCATCTGAAGATGGATATAACTGGAGAAAATATGGGCAGAAGCAAGTTAAGGGTAGCGAGTACCCACGAAGTTACTACAAGTGTACACATCCAAATTGTCCTGTGAAAAAGAAAGTAGAACGATCTCATCAAGGCCACATAACAGAGATCATCTATAAGGGAGCACACAACCATCCTAAACCTCCCCCGAATCGCCGCTCCGGCATAGCTTCAGCTAACCCTGCAAGTGACATGCAAATGGACAATCCGGAGCATGTTGAACGACAGAGTGGCAGTGATGGAGAGCTGGGCTGGGCTAATTTACAGAAGGGGAATGTAGCCGGAGCTGCTAATTGGAAGAATGACAACCTTGAGGTGACATCATCAGCATCTGTTGCCCCTGAGTATTGCAACCAGCCCACCAATTCACAGGCTCAAAATGGTACTCAGTTTGATTCGGGAGATGCTGTGGATGCCTCTTCTACTTTTTCCAATGAAGATGATGATGATGATCGAGGTACTCATGGTAGTGTATCATTAGCTTATGATGGGGAAGGAGATGAATCAGAATCGAAAAGAAGGAAACTGGAATCATATGCAACAGAGTTGAGTGGAGCTACTAGAGCTATTCGTGAACCTAGAGTTGTTGTACAAACTACCAGCGAAGTAGACATCCTTGATGATGGTTATCGGTGGAGGAAATATGGGCAGAAGGTTGTCAAAGGAAATCCCAACCCGAGGAGTTACTACAAGTGCACGAATGCAGGCTGCACTGTGAGGAAACACGTTGAGAGAGCATCACATGACCTTAAATCTGTCATCACTACATATGAGGGCAAGCACAACCATGATGTTCCTGCTGCACGCTCTAGCAGTCATGTCAATGCTAATGCTTCTGGCAGTGTTCCCGGGCAAGCCCATGTTCACAGACCTGAACCAAGTCAAGTTCACAGTGGCATGGGAAGGCTTGAGAGGCCTGCCCTCGGTGCATTCAACCTACCGGGGAGGCAGCAGCTAGGACCTCCACATGGCTTCTCCTTTGGAATGAATCAACATTTTGTGCCCAACTTGGCGATGCCTGGATTCGGACCCGGGCAAGCAAAGCTTCCTGTGATGCCTGTTCATCCATTCTTGGCAACACAACAACAACAGCTACGAACTCCTCCTCCTCCTCCTCATAATGTGATGGGTTTCATGTTGCCAAAGGGTGAACCAAATGTGGAGTCTATTCCTGAGCGTCATAACCTGCCCAGTGGCTCATACCAAGATATCATGAGTCGCATGCCTCTTGGACCTCACATGTGA 2106 0.4658 MAGVDENVGEWSGPSPSPRAFFSRMLGEDNENGAEEDGEKMVSRGGLVERMAARAGFNAPRLNTHSIRSTDLSLNSDVPSPYFTIPPGLSPTTLLDSPVFLANSLAQPSPTTGKFPFISNANIRFPELSSDAPERCKDNSFDDIYASSFAFKPATDSGSSFYQGAARKMNSTTIAQQSLPGVEVSVQSENSFQSQSAADAVKSQTENKSGLRLQSDFIESSPQQDNGINNLSGDQRVFDTVGGSIEHSPQLEEQADEEGEQRGNGDSMAAAGGAPSEDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCPVKKKVERSHQGHITEIIYKGAHNHPKPPPNRRSGIASANPASDMQMDNPEHVERQSGSDGELGWANLQKGNVAGAANWKNDNLEVTSSASVAPEYCNQPTNSQAQNGTQFDSGDAVDASSTFSNEDDDDDRGTHGSVSLAYDGEGDESESKRRKLESYATELSGATRAIREPRVVVQTTSEVDILDDGYRWRKYGQKVVKGNPNPRSYYKCTNAGCTVRKHVERASHDLKSVITTYEGKHNHDVPAARSSSHVNANASGSVPGQAHVHRPEPSQVHSGMGRLERPALGAFNLPGRQQLGPPHGFSFGMNQHFVPNLAMPGFGPGQAKLPVMPVHPFLATQQQQLRTPPPPPHNVMGFMLPKGEPNVESIPERHNLPSGSYQDIMSRMPLGPHM 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60477g00003 701 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 95 571 IPR044810 GO:0003700
Stsc60477g00003 701 Gene3D WRKY domain 480 546 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc60477g00003 701 SUPERFAMILY WRKY DNA-binding domain 485 553 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc60477g00003 701 SMART WRKY_cls 276 334 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc60477g00003 701 SMART WRKY_cls 493 552 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc60477g00003 701 MobiDBLite consensus disorder prediction 553 587 - -
Stsc60477g00003 701 Gene3D WRKY domain 268 336 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc60477g00003 701 FunFam WRKY transcription factor 266 336 - -
Stsc60477g00003 701 MobiDBLite consensus disorder prediction 555 569 - -
Stsc60477g00003 701 MobiDBLite consensus disorder prediction 402 469 - -
Stsc60477g00003 701 MobiDBLite consensus disorder prediction 1 41 - -
Stsc60477g00003 701 MobiDBLite consensus disorder prediction 326 373 - -
Stsc60477g00003 701 ProSiteProfiles WRKY domain profile. 488 553 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc60477g00003 701 MobiDBLite consensus disorder prediction 452 466 - -
Stsc60477g00003 701 FunFam WRKY transcription factor 33 480 546 - -
Stsc60477g00003 701 MobiDBLite consensus disorder prediction 220 283 - -
Stsc60477g00003 701 Pfam WRKY DNA -binding domain 494 550 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc60477g00003 701 Pfam WRKY DNA -binding domain 277 333 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc60477g00003 701 SUPERFAMILY WRKY DNA-binding domain 275 335 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc60477g00003 701 ProSiteProfiles WRKY domain profile. 271 335 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc60477g00003 701 MobiDBLite consensus disorder prediction 402 428 - -
Stsc60477g00003 701 MobiDBLite consensus disorder prediction 220 237 - -
Stsc60477g00003 701 MobiDBLite consensus disorder prediction 680 701 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60477g00003 Stsc-Chr60477 3761 6947 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60477g00003 1 696 WRKY Transcription Factor Family AT5G56270 50.926 0.0 568
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Stsc60477g00003 WRKY 3.5e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60477g00003 K18835 - gmx:100796545 1077.39