Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60476g00020 ATGGAGAGTAGAAGAAGTAATAACAATAAGAGCAACGAAGATATGAGTTTGCCGATTGCAAATGTGGGAAGAATAATGAAGAGAGTGGTGCCAGAAAGCGGAAAGATCTCAAAAGAAGGGAAGCAGTTAATGCAAGAGTGCGTGACGGAGTTCATCAGCTTCGTAACGGGCGAGGCCTCTGACAAGTGTCACAACGAGAATCGAAAGACTGTTAACGGCGACGACATCTGCTGGGCCCTTTCTTCCTTAGGCTTTGACAACTATGCAGAGCTCATCTCCAGGTACTTGTATAAGTACCGCCTTGCTCATACGGATCACAAACTTGCTGCAAATCTTGTAACTAACCAGAAAGATTGA 357 0.4482 MESRRSNNNKSNEDMSLPIANVGRIMKRVVPESGKISKEGKQLMQECVTEFISFVTGEASDKCHNENRKTVNGDDICWALSSLGFDNYAELISRYLYKYRLAHTDHKLAANLVTNQKD 118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60476g00020 118 ProSitePatterns NF-YB/HAP3 subunit signature. 47 63 IPR003956 GO:0005634|GO:0006355|GO:0043565
Stsc60476g00020 118 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 6 105 IPR027113 GO:0001228|GO:0006355|GO:0016602
Stsc60476g00020 118 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 15 80 IPR003958 -
Stsc60476g00020 118 PRINTS CCAAT-binding transcription factor subunit A signature 82 100 - -
Stsc60476g00020 118 PRINTS CCAAT-binding transcription factor subunit A signature 63 81 - -
Stsc60476g00020 118 PRINTS CCAAT-binding transcription factor subunit A signature 44 62 - -
Stsc60476g00020 118 SUPERFAMILY Histone-fold 13 106 IPR009072 GO:0046982
Stsc60476g00020 118 Gene3D Histone, subunit A 3 118 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60476g00020 Stsc-Chr60476 129054 129410 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60476g00020 11 118 CCAAT-HAP3 Transcription Factor Family AT1G09030 62.162 1.30e-47 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Stsc60476g00020 CBFD_NFYB_HMF 2.2e-25 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60476g00020 K08065 - gmx:100815151 160.999